DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim3 and Isl1

DIOPT Version :10

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_059035.3 Gene:Isl1 / 64444 RGDID:61957 Length:349 Species:Rattus norvegicus


Alignment Length:369 Identity:115/369 - (31%)
Similarity:167/369 - (45%) Gaps:89/369 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 DDPNPELVLALISRNRALEATIPKCGGCHELILDRFILKV---LERTWHAKCLQCSECHGQLNDK 159
            |.|..:.:::|             |.||...|.|::||:|   ||  |||.||:|:||:..|::.
  Rat     6 DPPKKKRLISL-------------CVGCGNQIHDQYILRVSPDLE--WHAACLKCAECNQYLDES 55

  Fly   160 --CFARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEF 222
              ||.|:|:.:||.|:.:.||.||:.|.:|......|.||:..|||::||.|..|||.|..||||
  Rat    56 CTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEF 120

  Fly   223 YLMEDRKLICKRDYEEAK---------------AKGLYLDGS-LDGDQPNKRP------------ 259
            .|.|| .|.|:.|::..:               |:.|.:... :...||..||            
  Rat   121 ALRED-GLFCRADHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRV 184

  Fly   260 RTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR-------LKKD 317
            ||.:..|||.||:|.|..:|:|...::|||.:.|||..||::|||||:|.|:|:       |::.
  Rat   185 RTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIMMKQLQQQ 249

  Fly   318 AGRTRWSQYFRSMKGN----CSP-RTD-----------------KFLDKDELKVDYDSFSHHDLS 360
            ....:.:  .:.|.|.    .|| |.|                 |.|....|:.|.|..:...|.
  Rat   250 QPNDKTN--IQGMTGTPMVAASPERHDGGLQANPVEVQSYQPPWKVLSDFALQSDIDQPAFQQLV 312

  Fly   361 NDSYSTVNLGLDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPV 404
            |.|         ||....:..||.:...||.....|:|....|:
  Rat   313 NFS---------EGGPGSNSTGSEVASMSSQLPDTPNSMVASPI 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 25/55 (45%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 25/54 (46%)
Homeodomain 257..313 CDD:459649 28/67 (42%)
Isl1NP_059035.3 LIM1_Isl 17..71 CDD:188752 25/55 (45%)
LIM2_Isl 79..133 CDD:188760 25/54 (46%)
HOX 181..237 CDD:197696 26/55 (47%)
LIM-binding domain (LID). /evidence=ECO:0000250 262..291 5/28 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 312..349 11/45 (24%)

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