Protein Alignment Lim3 and lhx6b

DIOPT Version :9

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: XP_685757.5
• Gene: lhx6b / 557579
• ZFINID: ZDB-GENE-060531-41
• Length: 286
• Species: Danio rerio
• Alignment Length: 287
• Identity: 97/287 - (33%)
• Similarity: 147/287 - (51%)
• Gaps: 49/287 - (17%)

  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQL--NDKCFARNGQLFCKEDFFKRYGTKCSAC 184
            |.||...|.||::|||...|||.:|||||.|...|  .:.||.||.::||:.|:...:|.||:.|
Zfish    33 CTGCSTEIFDRYVLKVNGLTWHLRCLQCSVCAVSLGHQNSCFIRNKEIFCRTDYNSTFGIKCARC 97

  Fly   185 DMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDY-------EEAKAK 242
            ...:.....:|||.:::|||.||.|..|.|.|:||:||.|||: :::|:..|       ::....
Zfish    98 GHQVSANDWIRRAGNDIYHLACFACFFCKRQLSTGEEFGLMEN-QVLCRVHYDITLLNLQQLSDN 161

  Fly   243 G--LYLDGSLDGD---QPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQV 302
            |  ::|||:|...   :.:|||||:.|::|::.::|.:.....|.....::|:..|||..||:||
Zfish   162 GNLIHLDGALPIQYLPKASKRPRTSFTSEQIQIMQTHFIRDKNPDAATLQRLADTTGLSRRVIQV 226

  Fly   303 WFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTV 367
            ||||.||::||:                     |..|...::|..:.....|. .|||:.|.|.|
Zfish   227 WFQNCRARQKRI---------------------PLHDSIPERDRYQTSAMPFL-SDLSSTSCSQV 269

  Fly   368 NLGLDEGASPHSIRGSYMHGSSSPSQY 394
            :|.|.            |..:|.|..|
Zfish   270 DLSLS------------MISASDPIHY 284

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	25/52 (48%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	22/54 (41%)
		Homeobox	259..312	CDD:278475	21/52 (40%)
lhx6b	XP_685757.5	LIM	32..86	CDD:295319	25/52 (48%)
		LIM	94..148	CDD:295319	22/54 (41%)
		Homeobox	183..236	CDD:278475	21/52 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.910