Protein Alignment Lim3 and lhx6b

DIOPT Version :10

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: XP_073807734.1
• Gene: lhx6b / 557579
• ZFINID: ZDB-GENE-060531-41
• Length: 307
• Species: Danio rerio
• Alignment Length: 287
• Identity: 97/287 - (33%)
• Similarity: 147/287 - (51%)
• Gaps: 49/287 - (17%)

  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQL--NDKCFARNGQLFCKEDFFKRYGTKCSAC 184
            |.||...|.||::|||...|||.:|||||.|...|  .:.||.||.::||:.|:...:|.||:.|
Zfish    54 CTGCSTEIFDRYVLKVNGLTWHLRCLQCSVCAVSLGHQNSCFIRNKEIFCRTDYNSTFGIKCARC 118

  Fly   185 DMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDY-------EEAKAK 242
            ...:.....:|||.:::|||.||.|..|.|.|:||:||.|||: :::|:..|       ::....
Zfish   119 GHQVSANDWIRRAGNDIYHLACFACFFCKRQLSTGEEFGLMEN-QVLCRVHYDITLLNLQQLSDN 182

  Fly   243 G--LYLDGSLDGD---QPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQV 302
            |  ::|||:|...   :.:|||||:.|::|::.::|.:.....|.....::|:..|||..||:||
Zfish   183 GNLIHLDGALPIQYLPKASKRPRTSFTSEQIQIMQTHFIRDKNPDAATLQRLADTTGLSRRVIQV 247

  Fly   303 WFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTV 367
            ||||.||::||:                     |..|...::|..:.....|. .|||:.|.|.|
Zfish   248 WFQNCRARQKRI---------------------PLHDSIPERDRYQTSAMPFL-SDLSSTSCSQV 290

  Fly   368 NLGLDEGASPHSIRGSYMHGSSSPSQY 394
            :|.|.            |..:|.|..|
Zfish   291 DLSLS------------MISASDPIHY 305

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	25/52 (48%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	22/54 (41%)
		Homeodomain	257..313	CDD:459649	23/55 (42%)
lhx6b	XP_073807734.1	None