DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lim3 and lmx1ba

DIOPT Version :9

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001349521.1 Gene:lmx1ba / 554361 ZFINID:ZDB-GENE-050114-3 Length:375 Species:Danio rerio


Alignment Length:329 Identity:114/329 - (34%)
Similarity:162/329 - (49%) Gaps:55/329 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSACDM 186
            |.|||..|.|||:|::.:.:||.:|||||.|...|...|::|:.:|:||.|:.:.:.||||.|..
Zfish    33 CEGCHRPISDRFLLRMNDSSWHEECLQCSVCQQLLTMSCYSRDHKLYCKHDYQQLFATKCSGCLE 97

  Fly   187 GIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAK----------- 240
            .|.||::|.||.::||||.||.|.:|.|.|..||||.|.|. :|:||.|||..|           
Zfish    98 KISPTELVMRALESVYHLSCFCCCVCERRLCKGDEFVLKEG-QLLCKTDYEREKDLASPDLSDSD 161

  Fly   241 ----------------AKGLYLDGSLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQL 289
                            .:|...|.|.|..:| |||||.:|.:|....|.::..|.||.|.|||.|
Zfish   162 KSEDEDLDVKPEKGAGGQGKGSDDSKDPRRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETL 225

  Fly   290 SQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSF 354
            :.:|||.:|||||||||:|||.|:|.:...:.:..|                 :...|..|..|.
Zfish   226 AAETGLSVRVVQVWFQNQRAKMKKLARRQQQQQEQQ-----------------NSQRLGQDVMSS 273

  Fly   355 SHHDLSNDSYSTVNLGLDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSYPDNIVY 419
            ...:|.: ||:.:     ....||::......|.|:.   |......||...|.....|.::.::
Zfish   274 RMENLMS-SYTPL-----APPPPHALVSMESSGYSTD---PFQQGLTPPQMPGDHMNPYGNDSIF 329

  Fly   420 TNID 423
            .:||
Zfish   330 HDID 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 23/50 (46%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 28/54 (52%)
Homeobox 259..312 CDD:278475 29/52 (56%)
lmx1baNP_001349521.1 LIM1_Lmx1b 33..85 CDD:188757 24/51 (47%)
LIM 92..146 CDD:295319 28/54 (52%)
Homeobox 195..248 CDD:306543 29/52 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.