Sequence 1: | NP_001260559.1 | Gene: | Lim3 / 35184 | FlyBaseID: | FBgn0002023 | Length: | 555 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001349521.1 | Gene: | lmx1ba / 554361 | ZFINID: | ZDB-GENE-050114-3 | Length: | 375 | Species: | Danio rerio |
Alignment Length: | 329 | Identity: | 114/329 - (34%) |
---|---|---|---|
Similarity: | 162/329 - (49%) | Gaps: | 55/329 - (16%) |
- Green bases have known domain annotations that are detailed below.
Fly 122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSACDM 186
Fly 187 GIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAK----------- 240
Fly 241 ----------------AKGLYLDGSLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQL 289
Fly 290 SQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSF 354
Fly 355 SHHDLSNDSYSTVNLGLDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSYPDNIVY 419
Fly 420 TNID 423 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lim3 | NP_001260559.1 | LIM1_Lhx3_Lhx4 | 122..173 | CDD:188754 | 23/50 (46%) |
LIM2_Lhx3_Lhx4 | 181..236 | CDD:188762 | 28/54 (52%) | ||
Homeobox | 259..312 | CDD:278475 | 29/52 (56%) | ||
lmx1ba | NP_001349521.1 | LIM1_Lmx1b | 33..85 | CDD:188757 | 24/51 (47%) |
LIM | 92..146 | CDD:295319 | 28/54 (52%) | ||
Homeobox | 195..248 | CDD:306543 | 29/52 (56%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |