Protein Alignment Lim3 and lhx5

DIOPT Version :9

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: NP_001016082.1
• Gene: lhx5 / 548836
• XenbaseID: XB-GENE-490400
• Length: 402
• Species: Xenopus tropicalis
• Alignment Length: 431
• Identity: 153/431 - (35%)
• Similarity: 217/431 - (50%)
• Gaps: 99/431 - (22%)

  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSACDM 186
            |.||...|||||:|.||:|.||.||:||.||...|.:|||:|.|:|:||.|||:|:||||:.|.:
 Frog     5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKTDFFRRFGTKCAGCSL 69

  Fly   187 GIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA---------- 241
            ||.|:.:||:|::.|:||.||.|.:|::.|:||:|.|::::.|.:||.||..|.:
 Frog    70 GISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDYASASSLKESSLNSVS 134

  Fly   242 -----------------KGLYLDGSLDGDQP------------NKR--PRTTITAKQLETLKTAY 275
                             :....|.|...|:.            .||  |||||.||||||||.|:
 Frog   135 SCTDRSLSPDLQDPIQDESKETDHSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAF 199

  Fly   276 NNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAGRTRWSQYFRSMKGNCSPRTD 339
            ..:|||.||:||||:|:|||:|||:||||||||:||:|:|: .|...|...:||      |||..
 Frog   200 AATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFR------SPRRM 258

  Fly   340 K----FLDKDELKVDYDSFSHH-DLSNDSYSTVNLGLDEGASPHSIRGSYMHGSSSPSQYPPSSR 399
            :    .||:.:: :....:|:: |...|.|.:.|...            :.||       ||||:
 Frog   259 RPLGGRLDESDI-LSSGPYSYYGDYQGDYYGSGNYDF------------FPHG-------PPSSQ 303

  Fly   400 SPPPVGQGHTFGSYPDNIVYTNIDQAVGSS----LHASKAHHRLHSSNNVSDLSNDSSPDQGYPD 460
            :..|....:...|.|            ||:    |.:..:.|  |.|.|.......|.||
 Frog   304 TQSPADSSYLQNSGP------------GSTPLGPLESQLSGH--HPSENQRYADMISHPD----- 349

  Fly   461 FPPSPDSWLGDSGSTNTTSANNNANNNSSSSHNNNNSSGGG 501
             .|||:..:  :||.:..|....:...|.....:|||...|
 Frog   350 -TPSPEPSM--TGSLHPISGEVFSGGPSPPFSMSNNSGFSG 387

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	29/50 (58%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	23/54 (43%)
		Homeobox	259..312	CDD:278475	39/52 (75%)
lhx5	NP_001016082.1	LIM1_Lhx1_Lhx5	5..56	CDD:188753	29/50 (58%)
		LIM2_Lhx1_Lhx5	64..119	CDD:188761	23/54 (43%)
		Homeobox	183..237	CDD:365835	40/53 (75%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910