DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim3 and lhx8

DIOPT Version :10

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_012816489.1 Gene:lhx8 / 548653 XenbaseID:XB-GENE-494997 Length:385 Species:Xenopus tropicalis


Alignment Length:333 Identity:99/333 - (29%)
Similarity:150/333 - (45%) Gaps:91/333 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQL--NDKCFARNGQLFCKEDFFKRYGTKCSAC 184
            |..|...|:|:::|||.:..||.:||.||.|...|  :..|:.::..::||.|:|:||||:||.|
 Frog   104 CSNCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIYCKLDYFRRYGTRCSRC 168

  Fly   185 DMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYE-------EAKAK 242
            ...|..|..||||:.|||||.||.|..|.|.|:||:||.|:|: |::|:..|:       .|...
 Frog   169 GRHIHATDWVRRAKGNVYHLACFACYSCKRQLSTGEEFALVEE-KVLCRVHYDCMLDNLKRAVEN 232

  Fly   243 G--LYLDGSLDGDQ------PNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRV 299
            |  :.::|:|..:|      |.||.||:.||.||:.::..:.....|.....::||:.|||..||
 Frog   233 GNRVSVEGALLTEQDINQPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLSERTGLSRRV 297

  Fly   300 VQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSY 364
            :||||||.||:.|:                   :.||.                           
 Frog   298 IQVWFQNCRARHKK-------------------HVSPN--------------------------- 316

  Fly   365 STVNLGLDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSYPDNIVYTNIDQAVGSS 429
                                 |.|::|......||..||:.:..|:.:|...      |..:.::
 Frog   317 ---------------------HSSTTPVTTVQPSRLSPPMLEEMTYSAYVPQ------DGPMLTA 354

  Fly   430 LHASKAHH 437
            ||:....|
 Frog   355 LHSYMDAH 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 18/52 (35%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 28/54 (52%)
Homeodomain 257..313 CDD:459649 24/55 (44%)
lhx8XP_012816489.1 LIM1_Lhx7_Lhx8 103..158 CDD:188767 19/53 (36%)
LIM2_Lhx7_Lhx8 165..219 CDD:188769 28/54 (52%)
Homeodomain 255..311 CDD:459649 24/55 (44%)

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