DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim3 and zfh2

DIOPT Version :9

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_524623.2 Gene:zfh2 / 43795 FlyBaseID:FBgn0004607 Length:3005 Species:Drosophila melanogaster


Alignment Length:595 Identity:112/595 - (18%)
Similarity:190/595 - (31%) Gaps:204/595 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 HHHQHQHQLQHPPQQ---QPHPHQQLQHPLQ----------------QQQHLSAMDNH----QQH 54
            |.:.:::.:|:...|   |....||.|..|:                ||..|..:.|:    |.:
  Fly  2469 HEYLYKYFMQNETSQEVKQQFLMQQQQKKLEQGNECDFELDFLTNFYQQNELKKVSNYDFLLQYY 2533

  Fly    55 QPHIHQQQQQQQ--------------------------QLPPTPQASHLVGG--------QQQQQ 85
            :.|...:..||.                          ||..:||....|.|        :....
  Fly  2534 RTHEEAKSSQQHTFSSSKKPTIEFLLQYYQLNESKKFFQLVASPQIIPDVPGYKPSLRIPKSTSD 2598

  Fly    86 QHPHHNHLAVDQ---------------DDPNPELVLALISRNRALEATIPKCGGCHELILDRFIL 135
            :.|:....:::|               |.|:.|..|:: ::|:                    :.
  Fly  2599 EAPYIGETSLEQATELQREKQDEQLRIDRPSEENDLSM-NKNK--------------------VE 2642

  Fly   136 KVLERTWHAKCLQCSECHG-----QLNDKCFARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVR 195
            .:.....:......:|.:|     :..::| .:...|...:|..|...|:....|        .:
  Fly  2643 NINNNNINVDQSNLTETNGGVPSVETKEEC-TQESSLIAMDDENKYLCTRSKQKD--------DK 2698

  Fly   196 RAQDNVYHLQCFLCAMC----SRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLD----G 252
            .....:::|:.||.|..    |:||...|      |.| .|::|.....:..:....|:.    .
  Fly  2699 EKSHYLHNLEDFLDATMIENNSQTLTFND------DEK-ACQKDELTQNSNAIEKRSSVSPVNVS 2756

  Fly   253 DQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 317
            .:.|||.||||..:||..|...|.:...|:|.:.|::|:...|..|||||||||.|||:|     
  Fly  2757 SKQNKRLRTTILPEQLNFLYECYQSESNPSRKMLEEISKKVNLKKRVVQVWFQNSRAKDK----- 2816

  Fly   318 AGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYS---TVNLGLDEGASPHS 379
              ::|..:::..:..:.|               ||..|..::.:|..|   ||:..|:.......
  Fly  2817 --KSRNQRHYAHISDDNS---------------YDGSSGKEVYSDLRSNGITVDTDLETNLQDCQ 2864

  Fly   380 IRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSYPDNIVYTNIDQAVGSSLHASKAHHRLHSSNN 444
            :                                  ..:...||.:...|..|.||....|..:..
  Fly  2865 L----------------------------------CQVTQVNIRKHAFSVEHISKMKKLLEQTTE 2895

  Fly   445 VSDLSNDSSPDQGYPD----FPPSPDSWLGDSGSTNTTS-------------------ANNNANN 486
            :...||.|..:....|    |.....::|.....||.||                   .|.:.|.
  Fly  2896 LYAQSNGSGSEDNDSDREKRFYNLSKAFLLQHVVTNATSHAIHTARQDSDVIAEGNCILNYDTNG 2960

  Fly   487 NSSSSHNNNN 496
            ..|.||..:|
  Fly  2961 GDSKSHVQHN 2970

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 4/55 (7%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 12/58 (21%)
Homeobox 259..312 CDD:278475 25/52 (48%)
zfh2NP_524623.2 C2H2 Zn finger 561..581 CDD:275368
C2H2 Zn finger 616..633 CDD:275368
C2H2 Zn finger 1515..1542 CDD:275371
C2H2 Zn finger 1543..1564 CDD:275371
HOX 1797..1853 CDD:197696
Homeobox 2158..2210 CDD:278475
Homeobox 2764..2816 CDD:278475 25/51 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45444981
Domainoid 1 1.000 48 1.000 Domainoid score I4481
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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