Protein Alignment Lim3 and zen

DIOPT Version :10

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: NP_476793.1
• Gene: zen / 40828
• FlyBaseID: FBgn0004053
• Length: 353
• Species: Drosophila melanogaster
• Alignment Length: 325
• Identity: 71/325 - (21%)
• Similarity: 116/325 - (35%)
• Gaps: 114/325 - (35%)

  Fly   254 QPN--------KRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 310
            |||        ||.||..|:.||..|:..:.::....|..|.:::|...|..|.|::||||||.|
  Fly    80 QPNHDSQRVKLKRSRTAFTSVQLVELENEFKSNMYLYRTRRIEIAQRLSLCERQVKIWFQNRRMK 144

  Fly   311 EKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSND--SYSTVNLGLDE 373
               .|||            ::|:..|:::..|.:.:.    :..:|..:...  |||
  Fly   145 ---FKKD------------IQGHREPKSNAKLAQPQA----EQSAHRGIVKRLMSYS-------- 182

  Fly   374 GASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSYPDNIVYTNIDQAVGSSLHASKAHHR 438
             ..|.       .|:::..:.|..:.:|        ....||.       ||.......:..::.
  Fly   183 -QDPR-------EGTAAAEKRPMMAVAP--------VNPKPDY-------QASQKMKTEASTNNG 224

  Fly   439 LHSSNNVSDLSNDSSPDQGYPDFPPSPDSWLGDSGSTNTTSANNNANNNSSSSHNNNNSSGGGSG 503
            :.||.::|::....:.....|..            ||.|:|...:.|:.||||          ||
  Fly   225 MCSSADLSEILEHLAQTTAAPQV------------STATSSTGTSTNSASSSS----------SG 267

  Fly   504 GVSVSTAPNPSAPGVHYXYS-NLLLRYFEMQSRSLLLAAAQ------------QQQQHQPHSSQL 555
                           ||.|: :|:|:..:..    |.||||            .|..|....||:
  Fly   268 ---------------HYSYNVDLVLQSIKQD----LEAAAQAWSKSKSAPILATQSWHPSSQSQV 313

  Fly   556  555
              Fly   314  313

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754
		LIM2_Lhx3_Lhx4	181..236	CDD:188762
		Homeodomain	257..313	CDD:459649	21/55 (38%)
zen	NP_476793.1	Homeodomain	91..147	CDD:459649	21/58 (36%)