Sequence 1: | NP_001260559.1 | Gene: | Lim3 / 35184 | FlyBaseID: | FBgn0002023 | Length: | 555 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001167617.1 | Gene: | LMX1B / 4010 | HGNCID: | 6654 | Length: | 406 | Species: | Homo sapiens |
Alignment Length: | 409 | Identity: | 126/409 - (30%) |
---|---|---|---|
Similarity: | 167/409 - (40%) | Gaps: | 122/409 - (29%) |
- Green bases have known domain annotations that are detailed below.
Fly 122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSACDM 186
Fly 187 GIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEE------------- 238
Fly 239 --------------AKAKGLYLDGS-LDGDQPN--KRPRTTITAKQLETLKTAYNNSPKPARHVR 286
Fly 287 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDY 351
Fly 352 DSFSHHDLSNDSYSTVNLGLDE-------GASPHSIRGSYMHGSSSPSQYPPSSR---------- 399
Fly 400 SPPPVGQGHTFGSYPDNIVYTNIDQAVGSSLHASKAHHRLHSSNNVSDLSNDSSPDQGYPDFPPS 464
Fly 465 PDSWLG--DSGSTNTTSAN 481 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lim3 | NP_001260559.1 | LIM1_Lhx3_Lhx4 | 122..173 | CDD:188754 | 22/50 (44%) |
LIM2_Lhx3_Lhx4 | 181..236 | CDD:188762 | 28/54 (52%) | ||
Homeobox | 259..312 | CDD:278475 | 29/52 (56%) | ||
LMX1B | NP_001167617.1 | LIM1_Lmx1b | 56..108 | CDD:188757 | 23/51 (45%) |
LIM2_Lmx1a_Lmx1b | 115..169 | CDD:188764 | 28/54 (52%) | ||
Homeobox | 222..275 | CDD:278475 | 29/52 (56%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |