Protein Alignment Lim3 and CG4328

DIOPT Version :10

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: NP_648567.2
• Gene: CG4328 / 39405
• FlyBaseID: FBgn0036274
• Length: 544
• Species: Drosophila melanogaster
• Alignment Length: 285
• Identity: 102/285 - (35%)
• Similarity: 154/285 - (54%)
• Gaps: 33/285 - (11%)

  Fly   103 ELVLALISRNRALEATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQL 167
            ||.||:.|      ..:.:|..|.:.|.||:|::|:|.::|..||:|:.|...|...|:||.|:|
  Fly   186 ELGLAMAS------PQLSQCAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKL 244

  Fly   168 FCKEDFFKRY-GTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLI 231
            :|:.|:.:.| ...|..|.:.|...::|.|..:||:||:||.|.:|...|..|:: |:::..:|.
  Fly   245 YCRVDYERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQ-YVVKQGQLF 308

  Fly   232 CKRDYEE----AKAKGLYLD----GSLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQ 288
            |:.|||:    .:....|.|    ..|||.:..|||||.:..:|....|.::..||||.|.|||.
  Fly   309 CRFDYEKEVEMLQGYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVREN 373

  Fly   289 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLD-------KDE 346
            |::||||.:|:|||||||:|||.|:::|.|     .|...|...:.|..:.:.||       |||
  Fly   374 LAKDTGLSLRIVQVWFQNQRAKVKKIQKKA-----KQEPPSKGASDSQDSQESLDSSLATKIKDE 433

  Fly   347 LKVDYDSFSHHDLSNDSYSTVNLGL 371
            ...|.:|     .....|||.:.||
  Fly   434 AHSDSES-----QLESPYSTTSDGL 453

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	20/50 (40%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	18/54 (33%)
		Homeodomain	257..313	CDD:459649	31/55 (56%)
CG4328	NP_648567.2	LIM1_Lmx1b	199..251	CDD:188757	21/51 (41%)
		LIM	259..313	CDD:413332	18/54 (33%)
		COG5576	<332..439	CDD:227863	46/111 (41%)
		HOX	341..393	CDD:197696	28/51 (55%)