DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim3 and zgc:56628

DIOPT Version :10

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_956566.1 Gene:zgc:56628 / 393242 ZFINID:ZDB-GENE-040426-1099 Length:172 Species:Danio rerio


Alignment Length:124 Identity:51/124 - (41%)
Similarity:71/124 - (57%) Gaps:6/124 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 KCGGCHELILDRFILKVLERTWHAKCLQCSECHGQL---NDKCFARNGQLFCKEDFFKRYGTK-- 180
            :|.||...|.|||:|..|:..||..||:||.|..||   ...||.:.|.:.||.|:.:.:|..  
Zfish    33 RCVGCGCKISDRFLLFALDGYWHCHCLKCSCCQAQLAEIGSSCFTKRGLILCKSDYLRLFGHSGA 97

  Fly   181 CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEA 239
            |.||...||..::|.|||.||:|::||:|::|...|..||.|: ..:.||.|:||...|
Zfish    98 CRACGTSIPANEMVMRAQGNVFHVKCFVCSICHNQLVPGDRFH-YANGKLYCERDKSAA 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 23/53 (43%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 24/54 (44%)
Homeodomain 257..313 CDD:459649
zgc:56628NP_956566.1 LIM 34..88 CDD:413332 23/53 (43%)
LIM2_LMO4 98..152 CDD:188773 24/54 (44%)
Blue background indicates that the domain is not in the aligned region.

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