Protein Alignment Lim3 and lhx8a

DIOPT Version :10

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: NP_001003980.1
• Gene: lhx8a / 378959
• ZFINID: ZDB-GENE-031008-2
• Length: 332
• Species: Danio rerio
• Alignment Length: 209
• Identity: 78/209 - (37%)
• Similarity: 122/209 - (58%)
• Gaps: 18/209 - (8%)

  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQL--NDKCFARNGQLFCKEDFFKRYGTKCSAC 184
            |..|...|:|:::|||.:..||.:||.||.|...|  :..|:.:..::|||.|:|::|||:|:.|
Zfish    51 CTSCGTEIVDKYLLKVNDMCWHVRCLSCSVCQTSLGRHISCYIKEKEIFCKLDYFRKYGTRCAHC 115

  Fly   185 DMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYE---------EAK 240
            ...|.....||||:.|.|||.||.|..|.|.|:||:||.|:::| ::|:..|:         ...
Zfish   116 GRNIHSNDWVRRAKGNTYHLACFACFSCKRQLSTGEEFALVDER-VLCRVHYDCMLDNLKRAMEN 179

  Fly   241 AKGLYLDGSLDGDQ------PNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRV 299
            .||:.::|::..:|      |.||.||:.||.||:.::..:.....|.....::|::.|||..||
Zfish   180 GKGVNVEGAVPSEQEVNQPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRV 244

  Fly   300 VQVWFQNRRAKEKR 313
            :||||||.||:.|:
Zfish   245 IQVWFQNCRARHKK 258

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	19/52 (37%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	24/54 (44%)
		Homeodomain	257..313	CDD:459649	23/55 (42%)
lhx8a	NP_001003980.1	LIM1_Lhx7_Lhx8	50..105	CDD:188767	20/53 (38%)
		LIM2_Lhx7_Lhx8	112..166	CDD:188769	24/54 (44%)
		Homeodomain	202..258	CDD:459649	23/55 (42%)