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Protein Alignment Lim3 and Lmo4
DIOPT Version :9
Sequence 1: | NP_001260559.1 |
Gene: | Lim3 / 35184 |
FlyBaseID: | FBgn0002023 |
Length: | 555 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001009708.1 |
Gene: | Lmo4 / 362051 |
RGDID: | 1305670 |
Length: | 165 |
Species: | Rattus norvegicus |
Alignment Length: | 141 |
Identity: | 54/141 - (38%) |
Similarity: | 81/141 - (57%) |
Gaps: | 11/141 - (7%) |
- Green bases have known domain annotations that are detailed below.
Fly 121 KCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLND---KCFARNGQLFCKEDFFKRYGTK-- 180
:|.||...|.|||:|..::..||::||:||.|..||.| .|:.::|.:.|:.|:.:.:|..
Rat 22 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGA 86
Fly 181 CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLY 245
||||...||.:::|.|||.|||||:||.|:.|...|..||.|:.: :..|.|:.|...| .
Rat 87 CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYI-NGSLFCEHDRPTA-----L 145
Fly 246 LDGSLDGDQPN 256
::|.|:..|.|
Rat 146 INGHLNSLQSN 156
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.910 |
|
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