DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim3 and Lhx4

DIOPT Version :9

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001101818.2 Gene:Lhx4 / 360858 RGDID:1308044 Length:390 Species:Rattus norvegicus


Alignment Length:384 Identity:195/384 - (50%)
Similarity:236/384 - (61%) Gaps:57/384 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSA 183
            ||:|.||::.|||:||||||:|.||:.||:|::|..||.|:||:|.|.::||||||||:||||:|
  Rat    27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTA 91

  Fly   184 CDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDG 248
            |..|||||||||:|||.||||.||.|.:|:|.|.||||||||||.:|:||.|||.||...     
  Rat    92 CQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND----- 151

  Fly   249 SLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 313
              |.:...||||||||||||||||.||.||||||||||||||.:|||||||||||||||||||||
  Rat   152 --DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKR 214

  Fly   314 LKKDAGRTRWSQYFRSMK---------------------GNCSPRTDKFLDK----DELKVDYDS 353
            |||||||.||.|:::|:|                     ...|.|.|:.|.:    :.:..:...
  Rat   215 LKKDAGRHRWGQFYKSVKRSRGGSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGD 279

  Fly   354 FSHHDLSNDSYSTVNLG-----LDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSY 413
            .:...|.|.|:|....|     |.:| ||:.|..|....||.||..|..|      |..:|..| 
  Rat   280 VTGGQLMNGSFSMDGTGQSYQDLRDG-SPYGIPQSPSSISSLPSHAPLLS------GLDYTVDS- 336

  Fly   414 PDNI-VYTNIDQAVGSSLHASKAHHRLHSSNNVSDLSNDSSPDQGYPDFPPSPDSWLGD 471
              |: |..:..|.|..:|.|.       :....||||..||  .||||||.||.|||.:
  Rat   337 --NLGVIAHPGQGVSQTLRAM-------AGGPTSDLSTGSS--VGYPDFPTSPASWLDE 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 29/50 (58%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 38/54 (70%)
Homeobox 259..312 CDD:278475 48/52 (92%)
Lhx4NP_001101818.2 LIM1_Lhx4 30..81 CDD:188852 29/50 (58%)
LIM2_Lhx3_Lhx4 89..144 CDD:188762 38/54 (70%)
Homeobox 160..214 CDD:395001 49/53 (92%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 99 1.000 Domainoid score I6916
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 359 1.000 Inparanoid score I2144
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1174754at2759
OrthoFinder 1 1.000 - - FOG0002911
OrthoInspector 1 1.000 - - otm46364
orthoMCL 1 0.900 - - OOG6_106440
Panther 1 1.100 - - O PTHR24208
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1144
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.970

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