Sequence 1: | NP_001260559.1 | Gene: | Lim3 / 35184 | FlyBaseID: | FBgn0002023 | Length: | 555 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001101818.2 | Gene: | Lhx4 / 360858 | RGDID: | 1308044 | Length: | 390 | Species: | Rattus norvegicus |
Alignment Length: | 384 | Identity: | 195/384 - (50%) |
---|---|---|---|
Similarity: | 236/384 - (61%) | Gaps: | 57/384 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 119 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSA 183
Fly 184 CDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDG 248
Fly 249 SLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 313
Fly 314 LKKDAGRTRWSQYFRSMK---------------------GNCSPRTDKFLDK----DELKVDYDS 353
Fly 354 FSHHDLSNDSYSTVNLG-----LDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSY 413
Fly 414 PDNI-VYTNIDQAVGSSLHASKAHHRLHSSNNVSDLSNDSSPDQGYPDFPPSPDSWLGD 471 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lim3 | NP_001260559.1 | LIM1_Lhx3_Lhx4 | 122..173 | CDD:188754 | 29/50 (58%) |
LIM2_Lhx3_Lhx4 | 181..236 | CDD:188762 | 38/54 (70%) | ||
Homeobox | 259..312 | CDD:278475 | 48/52 (92%) | ||
Lhx4 | NP_001101818.2 | LIM1_Lhx4 | 30..81 | CDD:188852 | 29/50 (58%) |
LIM2_Lhx3_Lhx4 | 89..144 | CDD:188762 | 38/54 (70%) | ||
Homeobox | 160..214 | CDD:395001 | 49/53 (92%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 99 | 1.000 | Domainoid score | I6916 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 359 | 1.000 | Inparanoid score | I2144 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1174754at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0002911 | |
OrthoInspector | 1 | 1.000 | - | - | otm46364 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_106440 | |
Panther | 1 | 1.100 | - | - | O | PTHR24208 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X1144 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
11 | 10.970 |