Protein Alignment Lim3 and ap

DIOPT Version :9

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: NP_724428.1
• Gene: ap / 35509
• FlyBaseID: FBgn0267978
• Length: 469
• Species: Drosophila melanogaster
• Alignment Length: 360
• Identity: 104/360 - (28%)
• Similarity: 148/360 - (41%)
• Gaps: 127/360 - (35%)

  Fly   109 ISRNRALEATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQL--NDKCFARNGQLFCKE 171
            |:||      :..|.||...|.|||.|..:|:.|||.||||..|...|  ...|::|:|.::||.
  Fly   141 ITRN------LDDCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKN 199

  Fly   172 DFFKRYGT-KCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRD 235
            |::..:|| :||.|...|...::|.||::.|:|:.||.|.:|...|..||::.:: |..:.|:..
  Fly   200 DYYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGII-DALIYCRTH 263

  Fly   236 Y----------------------------------------------------------EEAKAK 242
            |                                                          :.|:.|
  Fly   264 YSIAREGDTASSSMSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQPARQK 328

  Fly   243 GL---------------------YLD---GS-LDGDQPNKRPRTTITAKQLETLKT--AYNNSPK 280
            |.                     |:|   || |......||.||:....||.|:|:  |.|::|
  Fly   329 GRPRKRKPKDIEAFTANIDLNTEYVDFGRGSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNP- 392

  Fly   281 PARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAGRTRWSQYFRSMKGNCSPRTDKFLD 343
            .|:.:: ||||.|||..||:||||||.|||.:|  :|:|.                    ...|:
  Fly   393 DAKDLK-QLSQKTGLPKRVLQVWFQNARAKWRRMMMKQDG--------------------SGLLE 436

  Fly   344 KDELKVDYDSFSHHDLSNDSY------STVNLGLD 372
            |.|..:|.||.|.|  |..|:      ||..|.||
  Fly   437 KGEGALDLDSISVH--SPTSFILGGPNSTPPLNLD 469

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	23/52 (44%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	18/54 (33%)
		Homeobox	259..312	CDD:278475	28/54 (52%)
ap	NP_724428.1	LIM1_Lhx2_Lhx9	148..201	CDD:188755	23/52 (44%)
		LIM2_Lhx2_Lhx9	206..264	CDD:188763	20/58 (34%)
		Homeobox	371..424	CDD:395001	28/54 (52%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45444988
Domainoid	1	1.000	47	0.796	Domainoid score	I4515
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR24208
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	4	3.940