DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim3 and Lmx1a

DIOPT Version :10

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_061498757.1 Gene:Lmx1a / 3289904 VectorBaseID:AGAMI1_004173 Length:491 Species:Anopheles gambiae


Alignment Length:484 Identity:133/484 - (27%)
Similarity:195/484 - (40%) Gaps:167/484 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 EATIPKCGGCHELILDRFILKVL-ERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGT 179
            |.|...|.||.:.|.||:.:|:. ::.||.:||.|..|..||:..|:.:|.:::||:|:::.:|.
Mosquito    47 EKTQEICEGCGQKIKDRYFMKLSPDQFWHEQCLLCCICRIQLSQTCYTKNTKVYCKDDYYRIFGV 111

  Fly   180 K--------------------------CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNT 218
            .                          |..|...|.|:::|.||:..||||.||||..|:|.|..
Mosquito   112 SSVHQQNQQHHQQHGQQHGQQQQHQRDCYGCGERIAPSEMVMRAKHLVYHLHCFLCYTCNRPLQK 176

  Fly   219 GDEFYLMEDRKLICKRDYEE------------------------------------AKAKGLYLD 247
            |:.|.:... ||||:.|.|:                                    ..|..||.|
Mosquito   177 GEPFSIRAG-KLICQHDLEKDFYGSAAAAAAAAAAAAAAAMHHHHGGAGAGLGPHLPPAAHLYGD 240

  Fly   248 G----------SLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQV 302
            |          :.||.:..|||||.:|:.|....|.:::.||||.|.|||.|::||||.:|||||
Mosquito   241 GDDYLLDDGLRTRDGRRGPKRPRTILTSAQRRQFKASFDVSPKPCRKVREALAKDTGLSVRVVQV 305

  Fly   303 WFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTD---KFLDKDELKVDYDS----FSHHDLS 360
            ||||:|||.|::.            |..|.|.:..||   ...||::..:..:|    .||:   
Mosquito   306 WFQNQRAKMKKIS------------RKSKANANGATDGEKNHSDKEDKSIKLESPSSDHSHY--- 355

  Fly   361 NDSYSTVNLGLDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSYPDNIVYTNIDQA 425
                    ||||..           :.|||....|....||          .:|||         
Mosquito   356 --------LGLDSS-----------YSSSSQPLNPNLPYSP----------DFPDN--------- 382

  Fly   426 VGSSLHASKAHHRLHSSNNVSDLSNDSSPDQGYPDFPPSPDSWLGDSGSTNTTSANNNANNNSSS 490
                             ::.|..|:|.|.|:.:.:.         |..:::|.|..   |.:...
Mosquito   383 -----------------SDASLCSSDISLDESFDNV---------DEATSDTMSLQ---NLDLQP 418

  Fly   491 SHNNNNSSGGGSGGVSVSTAPNPSAPGVH 519
            :.::|...|||.||    ..|..|.||:|
Mosquito   419 NLHSNGVMGGGGGG----QGPTCSGPGLH 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 19/51 (37%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 24/54 (44%)
Homeodomain 257..313 CDD:459649 33/55 (60%)
Lmx1aXP_061498757.1 None

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