Protein Alignment Lim3 and Bx

DIOPT Version :10

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: NP_001259687.1
• Gene: Bx / 32846
• FlyBaseID: FBgn0265598
• Length: 424
• Species: Drosophila melanogaster
• Alignment Length: 520
• Identity: 113/520 - (21%)
• Similarity: 172/520 - (33%)
• Gaps: 197/520 - (37%)

  Fly    59 HQQQQQQQQLPPTPQASH--LVGGQQQQQQHPHHNHLAV-----------DQDDPNPELVLALIS 110
            :||||||||    .|.|:  :..|.|....:|:.|...|           :..:.|.:.:.|..:
  Fly    19 NQQQQQQQQ----SQQSNAGMNSGGQNNGPNPNGNGNVVNVVNSGGAGGGNNGNGNVQSIAAAAN 79

  Fly   111 RNRALEATIPK-CGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKE 171
            .|........: |.||.:.|.||::|:.|:..||..||:|..|.   |::....:.:...:.||.
  Fly    80 NNNNNNNNGSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKR 144

  Fly   172 DFFKRYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKR 234
            |:.:.:|..  |:||...||..::|.||:.|||||:||.|..|:.....||.|||.|: |::|:.
  Fly   145 DYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCEN-KILCEY 208

  Fly   235 DYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRV 299
            ||||                              ..:..:..|.|...|||
  Fly   209 DYEE------------------------------RLVFASMANHPMLKRHV-------------- 229

  Fly   300 VQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSY 364
                                         |..|..||..                     :..:.
  Fly   230 -----------------------------SSLGQGSPTG---------------------AAGAQ 244

  Fly   365 STVNLGLDEGASPHSIRG-SYMHGSSSPSQYPPSSRSP-PPVGQGHTFGSYPDNIVYTNIDQAVG 427
            :|....|..|....::.| ..::|..:|..:..::..| .|.|.|..|              |..
  Fly   245 NTAGGLLGGGPGGGNVNGVGMVNGPRTPGDHNNNNNGPQTPTGGGSPF--------------AAA 295

  Fly   428 SSLHASKAH--HRLHSSNNVSDLSNDSSPDQGYPDFPPSPDSWLGDSGSTNTTSANNNANNNSSS 490
            ::..|:.||  ::|.:|: ...|.                   :|.:|:...
  Fly   296 AAAAAAAAHMKNQLGASSXNKALG-------------------MGAAGAVVP------------- 328

  Fly   491 SHNNNNSSGGGSG-GVSVSTAPNPSAPGVHYXYSNLLLRYFEMQSRSLLLAAAQQQQQHQPHSSQ 554
                  .||.|:| ||.|..|.       ...||...|               |.|.|||.|..|
  Fly   329 ------GSGVGAGVGVGVGAAS-------QQFYSGFGL---------------QHQHQHQQHHQQ 365

  Fly   555  554
              Fly   366  365

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	17/53 (32%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	25/54 (46%)
		Homeodomain	257..313	CDD:459649	5/55 (9%)
Bx	NP_001259687.1	LIM1_LMO1_LMO3	92..146	CDD:188774	17/53 (32%)
		LIM2_dLMO	156..210	CDD:188776	25/54 (46%)