Sequence 1: | NP_001260559.1 | Gene: | Lim3 / 35184 | FlyBaseID: | FBgn0002023 | Length: | 555 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_572505.1 | Gene: | Lim1 / 31813 | FlyBaseID: | FBgn0026411 | Length: | 505 | Species: | Drosophila melanogaster |
Alignment Length: | 528 | Identity: | 159/528 - (30%) |
---|---|---|---|
Similarity: | 218/528 - (41%) | Gaps: | 192/528 - (36%) |
- Green bases have known domain annotations that are detailed below.
Fly 122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSACDM 186
Fly 187 GIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA---------- 241
Fly 242 ------------------------------------------------------KGLYLD---GS 249
Fly 250 LDGDQPNKR--------------------PRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTG 294
Fly 295 LDMRVVQVWFQNRRAKEKRLKK--DAGRTRWSQYFRSMKG---NCSPRTDKFLDKDELKVDYDSF 354
Fly 355 SHHDLSNDSYSTVNLGLDEGAS-PH-SIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSYPDNI 417
Fly 418 VYTNIDQAVGSSLHASKAHHRLHSSNNVSDLSNDSSPDQGYPDFPPSPD-SWLGDSGSTNTTSAN 481
Fly 482 NNANNNSSSSHNNNNSSGGGSGGVSVSTAPNPSAPGVHYXYSNLLLRYFEMQSRSLLLAAAQQQQ 546
Fly 547 QHQPHSSQ 554 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lim3 | NP_001260559.1 | LIM1_Lhx3_Lhx4 | 122..173 | CDD:188754 | 27/50 (54%) |
LIM2_Lhx3_Lhx4 | 181..236 | CDD:188762 | 25/54 (46%) | ||
Homeobox | 259..312 | CDD:278475 | 38/52 (73%) | ||
Lim1 | NP_572505.1 | LIM1_Lhx1_Lhx5 | 27..78 | CDD:188753 | 27/50 (54%) |
LIM2_Lhx1_Lhx5 | 86..141 | CDD:188761 | 25/54 (46%) | ||
COG5576 | 185..324 | CDD:227863 | 54/139 (39%) | ||
Homeobox | 250..303 | CDD:278475 | 38/52 (73%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45444991 | |
Domainoid | 1 | 1.000 | 48 | 1.000 | Domainoid score | I4481 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D113719at6656 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | P | PTHR24208 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.950 |