DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lim3 and Lim1

DIOPT Version :9

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster


Alignment Length:528 Identity:159/528 - (30%)
Similarity:218/528 - (41%) Gaps:192/528 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSACDM 186
            |.||::.|||:|:|.||||.|||.|::|.||...|.||||:|..:|:|:.|||:|||||||.|..
  Fly    27 CAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFFRRYGTKCSGCGQ 91

  Fly   187 GIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA---------- 241
            ||.|:.:||:.:|.|:||.||.|.:|.:.|:||::.|:::|.|.|||.||...||          
  Fly    92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCGHNSLSD 156

  Fly   242 ------------------------------------------------------KGLYLD---GS 249
                                                                  |..:.|   ||
  Fly   157 SLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSDQGS 221

  Fly   250 LDGDQPNKR--------------------PRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTG 294
            |||| |:.|                    |||||.|||||.||||:|.:|||.||:||||:::||
  Fly   222 LDGD-PDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETG 285

  Fly   295 LDMRVVQVWFQNRRAKEKRLKK--DAGRTRWSQYFRSMKG---NCSPRTDKFLDKDELKVDYDSF 354
            |.|||:||||||:|:||:|:|:  ..||..:....|.|:|   |.||.                 
  Fly   286 LPMRVIQVWFQNKRSKERRMKQITSMGRPPFFGGARKMRGFPMNLSPG----------------- 333

  Fly   355 SHHDLSNDSYSTVNLGLDEGAS-PH-SIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSYPDNI 417
                           |||:|.. |: :....:..|...|  :.|..   .|...||..|..|.| 
  Fly   334 ---------------GLDDGPGFPYFAADAKFEFGYGGP--FHPHD---GPYFPGHPGGPMPFN- 377

  Fly   418 VYTNIDQAVGSSLHASKAHHRLHSSNNVSDLSNDSSPDQGYPDFPPSPD-SWLGDSGSTNTTSAN 481
                   |.|..:                   :.|.|.....:|..:|: ::||.:|.......:
  Fly   378 -------APGGPM-------------------DHSGPIPMVNEFGLTPEATFLGQAGGPPMQLQS 416

  Fly   482 NNANNNSSSSHNNNNSSGGGSGGVSVSTAPNPSAPGVHYXYSNLLLRYFEMQSRSLLLAAAQQQQ 546
                                    :|...|.|..|...:..:        ..:.:....||||||
  Fly   417 ------------------------AVGPPPPPPPPSAEHLMA--------AAAAAAQQQAAQQQQ 449

  Fly   547 QHQPHSSQ 554
            |.|....|
  Fly   450 QQQQQQQQ 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 27/50 (54%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 25/54 (46%)
Homeobox 259..312 CDD:278475 38/52 (73%)
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753 27/50 (54%)
LIM2_Lhx1_Lhx5 86..141 CDD:188761 25/54 (46%)
COG5576 185..324 CDD:227863 54/139 (39%)
Homeobox 250..303 CDD:278475 38/52 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45444991
Domainoid 1 1.000 48 1.000 Domainoid score I4481
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D113719at6656
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24208
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.950

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