Protein Alignment Lim3 and Vsx2

DIOPT Version :9

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: NP_001284897.1
• Gene: Vsx2 / 31469
• FlyBaseID: FBgn0263512
• Length: 645
• Species: Drosophila melanogaster
• Alignment Length: 588
• Identity: 129/588 - (21%)
• Similarity: 175/588 - (29%)
• Gaps: 240/588 - (40%)

  Fly    11 LHHHHQHQHQLQHPPQQQPHPHQQLQHPLQQQQHLSAMDNHQQHQPHIHQQQQQQQQLPPTPQAS 75
            :||||||||| .||.....|||..:..|                              ||.|...
  Fly   136 VHHHHQHQHQ-HHPHHHPHHPHGAVGGP------------------------------PPPPPMQ 169

  Fly    76 HLVGGQQQQQQHPHHNHLAVDQDDPNPELVLALISRNRALEATI-PKCGGCHELILDRFILKVLE 139
            |         .||||.|..:......|:|..........|..:: ||..|...|
  Fly   170 H---------HHPHHPHHPLLHAQGFPQLKSFAAGAGTCLPGSLAPKDFGMESL----------- 214

  Fly   140 RTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHL 204
                                    ||                    .|:.|..
  Fly   215 ------------------------NG--------------------FGVGPNS------------ 223

  Fly   205 QCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQLE 269
                                            ::.|.|             .:..||..|:.|||
  Fly   224 --------------------------------KKKKKK-------------RRHSRTIFTSYQLE 243

  Fly   270 TLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD-AGRTRWSQY--FRSMK 331
            .|:.|:..:..|..:.||.||..|.|....:||||||||||.::.:|. .|.|..::|  :.:|.
  Fly   244 KLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAEYGLYGAMV 308

  Fly   332 GNCSPRTDKFLD--KDELKVDYDSFSHHDLSNDSYSTVNLGLDEGASPHSIRGSYMHGSSSPSQY 394
            .:..|..|..|.  ||               ||:.:...||:::         ..||..|..:|.
  Fly   309 RHSLPLPDTILKSAKD---------------NDAVAPWLLGMEQ---------KCMHRKSIEAQS 349

  Fly   395 PPSSRSPPPVGQGHTFGSYPDNIVYTNIDQAVGSSLHA---SKAH-HRLHSSN---NVSDLSNDS 452
            ....                |:.|..:.|.|...|.|:   |::. |.|.||.   ||...:..|
  Fly   350 ALKD----------------DSGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSS 398

  Fly   453 SPDQGYPDFPP-SPDSWLGDSGSTNTTSANNNANNNSSSSHNNNNSSGG---------------- 500
            .|.......|| |...:.|.:.|..||....:..|:|||.|....|...
  Fly   399 CPTSASTSAPPTSTSGYAGAASSAATTPTGASTTNSSSSPHIELGSPSPQQQQHLQLQQQQQQQA 463

  Fly   501 ----GSGGVSVSTAPNPS---------APGVHYXYSNLLLRYFEM-QSRSLLLAAAQQQQQHQPH 551
                |:|.|....|| ||         |.|... .|:   :.|.| .:.::..|||..|||||..
  Fly   464 SLYLGAGAVVTGCAP-PSYHPLLDAANAAGAGAAASS---KDFHMIMNTAVAAAAAAAQQQHQQQ 524

  Fly   552 SSQ 554
            ..|
  Fly   525 QQQ 527

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	4/50 (8%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	2/54 (4%)
		Homeobox	259..312	CDD:278475	25/52 (48%)
Vsx2	NP_001284897.1	Homeobox	233..286	CDD:278475	25/52 (48%)
		OAR	556..570	CDD:281777

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	49	1.000	Domainoid score	I2937
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1174754at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	2.010