Protein Alignment Lim3 and Lhx6

DIOPT Version :9

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: NP_001101307.2
• Gene: Lhx6 / 311901
• RGDID: 1306174
• Length: 392
• Species: Rattus norvegicus
• Alignment Length: 208
• Identity: 83/208 - (39%)
• Similarity: 122/208 - (58%)
• Gaps: 17/208 - (8%)

  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQL--NDKCFARNGQLFCKEDFFKRYGTKCSAC 184
            |..|...||||::|||....||.:||:||.|...|  .:.|:.:|.:::||.|:|.|:||||:.|
  Rat    99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARC 163

  Fly   185 DMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYE---------EAK 240
            ...|..:..||||:.|.|||.||.|..|.|.|:||:||.|:|: |::|:..|:         ...
  Rat   164 GRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHYDTMIENLKRAAEN 227

  Fly   241 AKGLYLDGSLDGDQ-----PNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVV 300
            ..||.|:|::..:|     |.||.||:.||:||:.::..:.....|.....::|:..|||..||:
  Rat   228 GNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVI 292

  Fly   301 QVWFQNRRAKEKR 313
            ||||||.||:.|:
  Rat   293 QVWFQNCRARHKK 305

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	21/52 (40%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	25/54 (46%)
		Homeobox	259..312	CDD:278475	21/52 (40%)
Lhx6	NP_001101307.2	LIM1_Lhx6	99..152	CDD:188766	21/52 (40%)
		LIM2_Lhx6	160..214	CDD:188768	25/54 (46%)
		Homeobox	252..305	CDD:395001	21/52 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910