Sequence 1: | NP_001260559.1 | Gene: | Lim3 / 35184 | FlyBaseID: | FBgn0002023 | Length: | 555 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006249976.1 | Gene: | Lhx9 / 289048 | RGDID: | 727956 | Length: | 397 | Species: | Rattus norvegicus |
Alignment Length: | 342 | Identity: | 108/342 - (31%) |
---|---|---|---|
Similarity: | 161/342 - (47%) | Gaps: | 92/342 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDK--CFARNGQLFCKEDFFKRYGT-KCSA 183
Fly 184 CDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYE----------- 237
Fly 238 -----EAKAKGL---YLDGS----------------------------------LDGD------- 253
Fly 254 QPNKRPRTTITAKQLETLKT--AYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR--L 314
Fly 315 KKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDS---YSTVNLGLDEGAS 376
Fly 377 PHSIRGSYMHGSSSPSQ 393 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lim3 | NP_001260559.1 | LIM1_Lhx3_Lhx4 | 122..173 | CDD:188754 | 22/52 (42%) |
LIM2_Lhx3_Lhx4 | 181..236 | CDD:188762 | 25/54 (46%) | ||
Homeobox | 259..312 | CDD:278475 | 27/54 (50%) | ||
Lhx9 | XP_006249976.1 | LIM1_Lhx2 | 61..124 | CDD:188853 | 22/52 (42%) |
LIM2_Lhx2_Lhx9 | 129..187 | CDD:188763 | 25/58 (43%) | ||
Homeobox | 271..324 | CDD:395001 | 27/54 (50%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |