DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim3 and lmo1

DIOPT Version :10

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_021333063.1 Gene:lmo1 / 280646 ZFINID:ZDB-GENE-021115-6 Length:179 Species:Danio rerio


Alignment Length:129 Identity:48/129 - (37%)
Similarity:80/129 - (62%) Gaps:6/129 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGT--KC 181
            |.||:..|.||::||.|::.||..||:|:.|.   |::....:.:...:.|:.|:.:.:||  .|
Zfish    47 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNC 111

  Fly   182 SACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLY 245
            :||...||..::|.||:||||||.||.|.:|::....||:|:| ::..::|:.||||.:..|.:
Zfish   112 AACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQMDYEEGQLNGSF 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 17/53 (32%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 23/54 (43%)
Homeodomain 257..313 CDD:459649
lmo1XP_021333063.1 LIM1_LMO1_LMO3 47..101 CDD:188774 17/53 (32%)
LIM2_LMO1_LMO3 111..165 CDD:188775 23/54 (43%)
Blue background indicates that the domain is not in the aligned region.

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