Protein Alignment Lim3 and Lhx1

DIOPT Version :10

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: NP_665887.3
• Gene: Lhx1 / 257634
• RGDID: 71074
• Length: 406
• Species: Rattus norvegicus
• Alignment Length: 435
• Identity: 155/435 - (35%)
• Similarity: 208/435 - (47%)
• Gaps: 106/435 - (24%)

  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSACDM 186
            |.||...|||||:|.||:|.||.||:||.||...|.:|||:|.|:|:||.|||:.:||||:.|..
  Rat     4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQ 68

  Fly   187 GIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDY----EEAKAKGLYL- 246
            ||.|:.:||||:..|:||.||.|.||::.|:||:|.|::::.|.:||.||    ..||...|:.
  Rat    69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSA 133

  Fly   247 --------------------------------DGSLDGDQPN---KR--PRTTITAKQLETLKTA 274
                                            .||.:.|..|   ||  |||||.||||||||.|
  Rat   134 TTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAA 198

  Fly   275 YNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAGRTRWSQYFRSMKGNCSPRT 338
            :..:|||.||:||||:|:|||:|||:||||||||:||:|:|: .|...|...:|||.: ...|..
  Rat   199 FAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPR-RMRPLV 262

  Fly   339 DKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGASPHSIRGSYMHGSSSPS-------QYPP 396
            |: |:..||           :.|              .|.|..|.|......|.       |.||
  Rat   263 DR-LEPGEL-----------IPN--------------GPFSFYGDYQSEYYGPGGNYDFFPQGPP 301

  Fly   397 SSRSPPPVGQGHTFGSYPDNIVYTNIDQAVGSSLHASKAHHRLHSSNNVSDL-----SNDSSPDQ 456
            ||::..||.......|.|.......:|       |....||....:...:|:     .:..||:.
  Rat   302 SSQAQTPVDLPFVPSSGPSGTPLGGLD-------HPLPGHHPSSEAQRFTDILAHPPGDSPSPEP 359

  Fly   457 GYPD---------FPPSPDSWLGDSGSTNTTSANNNANNNSSSSH 492
            ..|.         |.|||        ..::.|.|..|:..:..||
  Rat   360 SLPGPLHSMSAEVFGPSP--------PFSSLSVNGGASYGNHLSH 396

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	29/50 (58%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	25/54 (46%)
		Homeodomain	257..313	CDD:459649	42/57 (74%)
Lhx1	NP_665887.3	LIM1_Lhx1_Lhx5	4..55	CDD:188753	29/50 (58%)
		LIM2_Lhx1_Lhx5	63..118	CDD:188761	25/54 (46%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	128..189		12/60 (20%)
		Homeodomain	181..237	CDD:459649	40/55 (73%)
		dnaA	<263..>382	CDD:455861	31/159 (19%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	294..372		17/84 (20%)