Protein Alignment Lim3 and lim-4

DIOPT Version :10

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: NP_508669.1
• Gene: lim-4 / 180672
• WormBaseID: WBGene00002987
• Length: 355
• Species: Caenorhabditis elegans
• Alignment Length: 333
• Identity: 100/333 - (30%)
• Similarity: 142/333 - (42%)
• Gaps: 96/333 - (28%)

  Fly   116 EATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRY--- 177
            :|.|..|..|...|.|:|.|.:..|.:|..|||||.|...|::|||.::...:||..:|:.:
 Worm    92 DAVIVICTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPLSNKCFYKDKTFYCKGCYFRTHVTS 156

  Fly   178 --------GTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKR 234
                    |.||::||..|..|..||||::.||||.||.|..|.|.|:||:| |.:::..|:||:
 Worm   157 TASSCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEE-YALQEGNLLCKQ 220

  Fly   235 DYEEAKAKGLYLDGSLDGDQ-------PNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQD 292
            .:.|.          ::||.       ..||.|||....||..|:|.:|....|.....|:::..
 Worm   221 HFLEL----------VEGDSGVSSQKAKTKRVRTTFAEDQLSVLQTYFNRDSNPDGADLEKIASM 275

  Fly   293 TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHH 357
            |||..||.||||||.||::|         :|.|
 Worm   276 TGLSKRVTQVWFQNSRARQK---------KWHQ-------------------------------- 299

  Fly   358 DLSNDSYSTVNLGLDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSYPDNIVYTNI 422
                         ..||.:..|.|.|.  |.|||||...||...          .||.::. |::
 Worm   300 -------------KSEGDNGDSQRSSV--GPSSPSQKSDSSSEM----------MYPTSVT-TSV 338

  Fly   423 DQAVGSSL 430
            :.|:..|:
 Worm   339 EDAIPDSI 346

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	20/50 (40%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	26/54 (48%)
		Homeodomain	257..313	CDD:459649	25/55 (45%)
lim-4	NP_508669.1	LIM	98..153	CDD:395333	21/54 (39%)
		LIM2_AWH	168..222	CDD:188765	26/54 (48%)
		Homeodomain	240..296	CDD:459649	26/64 (41%)