DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim3 and Lhx9

DIOPT Version :10

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001036042.1 Gene:Lhx9 / 16876 MGIID:1316721 Length:397 Species:Mus musculus


Alignment Length:342 Identity:107/342 - (31%)
Similarity:160/342 - (46%) Gaps:92/342 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDK--CFARNGQLFCKEDFFKRYGT-KCSA 183
            |.||...|.||:.|..:::.||.:||:|.||...|..:  |||::|.::||||:::|:.. :|:.
Mouse    71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCAR 135

  Fly   184 CDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYE----------- 237
            |.:||..:::|.||:|:||||.||.|:.|::||.|||.|. |:|..:.|:..:|           
Mouse   136 CHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKDSLVYCRAHFETLLQGEYPPQL 199

  Fly   238 -----EAKAKGL---YLDGS----------------------------------LDGD------- 253
                 .||:.||   |.:|:                                  ||.|       
Mouse   200 SYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPS 264

  Fly   254 QPNKRPRTTITAKQLETLKT--AYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR--L 314
            |..||.||:....||.|:|:  |.|::| .|:.:: ||:|.|||..||:||||||.|||.:|  |
Mouse   265 QKTKRMRTSFKHHQLRTMKSYFAINHNP-DAKDLK-QLAQKTGLTKRVLQVWFQNARAKFRRNLL 327

  Fly   315 KKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDS---YSTVNLGLDEGAS 376
            :::.|..      ....|...|.... .|...|.....:.:..||:|.:   .:||...:|.   
Mouse   328 RQENGGV------DKADGTSLPAPPS-ADSGALTPPGTATTLTDLTNPTVTVVTTVTSNMDS--- 382

  Fly   377 PHSIRGSYMHGSSSPSQ 393
                     |...||||
Mouse   383 ---------HEPGSPSQ 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 22/52 (42%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 25/54 (46%)
Homeodomain 257..313 CDD:459649 29/57 (51%)
Lhx9NP_001036042.1 LIM1_Lhx2 61..124 CDD:188853 22/52 (42%)
LIM2_Lhx2_Lhx9 129..187 CDD:188763 25/58 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..272 6/23 (26%)
Homeodomain 268..324 CDD:459649 29/57 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 330..365 5/41 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 378..397 6/25 (24%)

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