Sequence 1: | NP_001260559.1 | Gene: | Lim3 / 35184 | FlyBaseID: | FBgn0002023 | Length: | 555 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_034842.2 | Gene: | Lhx4 / 16872 | MGIID: | 101776 | Length: | 390 | Species: | Mus musculus |
Alignment Length: | 386 | Identity: | 192/386 - (49%) |
---|---|---|---|
Similarity: | 234/386 - (60%) | Gaps: | 61/386 - (15%) |
- Green bases have known domain annotations that are detailed below.
Fly 119 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSA 183
Fly 184 CDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDG 248
Fly 249 SLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 313
Fly 314 LKKDAGRTRWSQYFRSMK---------------------GNCSPRTDKFLDK----DELKVDYDS 353
Fly 354 FSHHDLSNDSYSTVNLG-----LDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSY 413
Fly 414 PDNIVYTNIDQAVGSSLHASKAHH---RLHSSNNVSDLSNDSSPDQGYPDFPPSPDSWLGD 471 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lim3 | NP_001260559.1 | LIM1_Lhx3_Lhx4 | 122..173 | CDD:188754 | 29/50 (58%) |
LIM2_Lhx3_Lhx4 | 181..236 | CDD:188762 | 38/54 (70%) | ||
Homeobox | 259..312 | CDD:278475 | 48/52 (92%) | ||
Lhx4 | NP_034842.2 | LIM1_Lhx4 | 30..81 | CDD:188852 | 29/50 (58%) |
LIM2_Lhx3_Lhx4 | 89..144 | CDD:188762 | 38/54 (70%) | ||
Homeobox | 160..213 | CDD:306543 | 48/52 (92%) | ||
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:Q969G2 | 161..181 | 17/19 (89%) | |||
Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:Q969G2 | 199..211 | 11/11 (100%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 231..253 | 1/21 (5%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 355..390 | 17/32 (53%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 99 | 1.000 | Domainoid score | I7079 |
eggNOG | 1 | 0.900 | - | - | E1_KOG4577 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 351 | 1.000 | Inparanoid score | I2256 |
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S2759 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0002911 | |
OrthoInspector | 1 | 1.000 | - | - | otm44266 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_106440 | |
Panther | 1 | 1.100 | - | - | O | PTHR24208 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R2568 |
SonicParanoid | 1 | 1.000 | - | - | X1144 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
13 | 12.800 |