DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim3 and Lhx4

DIOPT Version :9

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_034842.2 Gene:Lhx4 / 16872 MGIID:101776 Length:390 Species:Mus musculus


Alignment Length:386 Identity:192/386 - (49%)
Similarity:234/386 - (60%) Gaps:61/386 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSA 183
            ||:|.||::.|||:||||||:|.||:.||:|::|..||.|:||:|.|.::||||||||:||||:|
Mouse    27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTA 91

  Fly   184 CDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDG 248
            |..|||||||||:|||.||||.||.|.:|:|.|.||||||||||.:|:||.|||.||...     
Mouse    92 CQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQND----- 151

  Fly   249 SLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 313
              |.:...||||||||||||||||.||.||||||||||||||.:|||||||||||||||||||||
Mouse   152 --DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKR 214

  Fly   314 LKKDAGRTRWSQYFRSMK---------------------GNCSPRTDKFLDK----DELKVDYDS 353
            |||||||.||.|:::|:|                     ...|.|.|:.|.:    :.:..:...
Mouse   215 LKKDAGRHRWGQFYKSVKRSRGGSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGD 279

  Fly   354 FSHHDLSNDSYSTVNLG-----LDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSY 413
            .:...|.|.|:|....|     |.:| ||:.|..|....||.||..|                 .
Mouse   280 VTGGQLMNGSFSMDGTGQSYQDLRDG-SPYGIPQSPSSISSLPSHAP-----------------L 326

  Fly   414 PDNIVYTNIDQAVGSSLHASKAHH---RLHSSNNVSDLSNDSSPDQGYPDFPPSPDSWLGD 471
            .:.:.|| :|..:|...||.:...   |..:....||||..||  .||||||.||.|||.:
Mouse   327 LNGLDYT-VDSNLGIIAHAGQGVSQTLRAMAGGPTSDLSTGSS--VGYPDFPTSPASWLDE 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 29/50 (58%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 38/54 (70%)
Homeobox 259..312 CDD:278475 48/52 (92%)
Lhx4NP_034842.2 LIM1_Lhx4 30..81 CDD:188852 29/50 (58%)
LIM2_Lhx3_Lhx4 89..144 CDD:188762 38/54 (70%)
Homeobox 160..213 CDD:306543 48/52 (92%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:Q969G2 161..181 17/19 (89%)
Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:Q969G2 199..211 11/11 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 231..253 1/21 (5%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 355..390 17/32 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 99 1.000 Domainoid score I7079
eggNOG 1 0.900 - - E1_KOG4577
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 351 1.000 Inparanoid score I2256
Isobase 1 0.950 - 0 Normalized mean entropy S2759
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002911
OrthoInspector 1 1.000 - - otm44266
orthoMCL 1 0.900 - - OOG6_106440
Panther 1 1.100 - - O PTHR24208
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2568
SonicParanoid 1 1.000 - - X1144
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.800

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