DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim3 and Lhx3

DIOPT Version :9

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001034742.1 Gene:Lhx3 / 16871 MGIID:102673 Length:402 Species:Mus musculus


Alignment Length:408 Identity:209/408 - (51%)
Similarity:252/408 - (61%) Gaps:54/408 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 DPNPE-----LVLALISRNRALEATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLND 158
            ||:.|     |:|||::|...|...||.|.||.:.||||||||.|:|.||:|||:||:||..|.:
Mouse     8 DPSRESAGGDLLLALLARRADLRREIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE 72

  Fly   159 KCFARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFY 223
            :||:|...::||:|||||:||||:||.:|||||||||||||.||||.||.|.:|.|.|.||||||
Mouse    73 RCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFY 137

  Fly   224 LMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQ 288
            ||||.:|:||.|||.||.:        :.:...||||||||||||||||:|||.|||||||||||
Mouse   138 LMEDSRLVCKADYETAKQR--------EAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQ 194

  Fly   289 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDS 353
            ||.:||||||||||||||||||||||||||||.||.||||:||.:   |.....|||.::...||
Mouse   195 LSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRS---RGSSKSDKDSIQEGQDS 256

  Fly   354 FSHHDLSNDSYSTVNLGLDEG------------ASPHSIRGSYM--HGS-SSPSQY--------- 394
            .:....: |..|..::|...|            ..|....||:.  ||. :.|.||         
Mouse   257 DAEVSFT-DEPSMADMGPANGLYSSLGEPAPALGRPVGGLGSFTLDHGGLTGPEQYRELRPGSPY 320

  Fly   395 --PPSSRSPPPV-GQGHTFGS--YPDNIVYTNIDQAVGSSLHASKAHHRLHSSNN-VSDLSNDSS 453
              |||..:|..: |......|  |||    ||: ..|.|.........|:.:.|. .||||.:||
Mouse   321 GIPPSPAAPQSLPGPQPLLSSLVYPD----TNL-SLVPSGPPGGPPPMRVLAGNGPSSDLSTESS 380

  Fly   454 PDQGYPDFPPSPDSWLGD 471
              .||||||.||.|||.:
Mouse   381 --SGYPDFPASPASWLDE 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 28/50 (56%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 39/54 (72%)
Homeobox 259..312 CDD:278475 48/52 (92%)
Lhx3NP_001034742.1 LIM1_Lhx3b 33..87 CDD:188851 30/53 (57%)
LIM2_Lhx3_Lhx4 95..150 CDD:188762 39/54 (72%)
Homeobox 165..218 CDD:278475 48/52 (92%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 111 1.000 Domainoid score I6284
eggNOG 1 0.900 - - E1_KOG4577
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7814
Inparanoid 1 1.050 351 1.000 Inparanoid score I2256
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1174754at2759
OrthoFinder 1 1.000 - - FOG0002911
OrthoInspector 1 1.000 - - otm44266
orthoMCL 1 0.900 - - OOG6_106440
Panther 1 1.100 - - LDO PTHR24208
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2568
SonicParanoid 1 1.000 - - X1144
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.860

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