DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim3 and LOC1277139

DIOPT Version :10

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_061503482.1 Gene:LOC1277139 / 1277139 VectorBaseID:AGAMI1_004350 Length:313 Species:Anopheles gambiae


Alignment Length:390 Identity:121/390 - (31%)
Similarity:170/390 - (43%) Gaps:112/390 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 LEATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDK--CFARNGQLFCKEDFFKRY 177
            ::..:..|..|.|.|.|:|:|.|...:||:.||:|..||..|:.:  ||.|..|::||.|:.||:
Mosquito     1 MKKELRSCTACGEPISDQFLLDVGGCSWHSACLRCCICHTPLDHQPSCFLRERQIYCKTDYTKRF 65

  Fly   178 GTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAK 242
            ||||:.|...|..|..||||:|.::||.||.|..|.|.|:||::|.|::| |::||..|.|....
Mosquito    66 GTKCARCSRTISATDWVRRARDLIFHLACFACDSCGRQLSTGEQFALVDD-KVLCKTHYSEMFDC 129

  Fly   243 GLYLDG--SLDGDQPN---KRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQV 302
            |...|.  ..||.|.|   ||.|||.|.:||:.|:..:|....|.....|:::..|||..||.||
Mosquito   130 GTSSDDGCEADGYQKNNKTKRVRTTFTEEQLQILQANFNIDSNPDGQDLERIASVTGLSKRVTQV 194

  Fly   303 WFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTV 367
            ||||.||::|         :..|..|  :|..:|                 |:.|         :
Mosquito   195 WFQNSRARQK---------KHVQVPR--EGEMNP-----------------FARH---------I 222

  Fly   368 NLGLDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSYPDNIVYTNIDQAVGSSLHA 432
            ||.|                                   .:||             |..|.::|.
Mosquito   223 NLQL-----------------------------------SYTF-------------QQAGGAVHN 239

  Fly   433 SKAHHRLHSSNNVSDLSNDSSPDQGYPDFPPSPDSWLGDSGSTNTTSANNNANNNSSSSHNNNNS 497
            |     ||           ..|..|......||   .|.:||..:...|||.||||::.:||::|
Mosquito   240 S-----LH-----------LGPGGGMGVLSGSP---FGPNGSFGSHHHNNNNNNNSTNINNNHSS 285

  Fly   498  497
            Mosquito   286  285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 22/52 (42%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 25/54 (46%)
Homeodomain 257..313 CDD:459649 25/55 (45%)
LOC1277139XP_061503482.1 None

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