DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim3 and Lmx1b

DIOPT Version :10

Sequence 1:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_063139064.1 Gene:Lmx1b / 114501 RGDID:620843 Length:410 Species:Rattus norvegicus


Alignment Length:412 Identity:127/412 - (30%)
Similarity:169/412 - (41%) Gaps:124/412 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSACDM 186
            |.||...|.|||:::|.|.:||.:||||:.|...|...|:.|:.:|:||:|:.:.:..|||.|..
  Rat    56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCME 120

  Fly   187 GIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEE------------- 238
            .|.||:.|.||.:.||||.||.|.:|.|.|..||||.|.|. :|:||.|||:             
  Rat   121 KIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKDLLSSVSPDES 184

  Fly   239 --------------AKAKGLYLDGS-LDGDQPN--KRPRTTITAKQLETLKTAYNNSPKPARHVR 286
                          ||.:|....|| .||..|.  |||||.:|.:|....|.::..|.||.|.||
  Rat   185 DSVKSEDEDGDMKPAKGQGSQNKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 249

  Fly   287 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDY 351
            |.|:.:|||.:|||||||||:|||.|:|.:                                   
  Rat   250 ETLAAETGLSVRVVQVWFQNQRAKMKKLAR----------------------------------- 279

  Fly   352 DSFSHHDLSNDSYSTVNLGLDE----GASPHS----IRGSYMHG--SSSPSQYPPSSR------- 399
                .|....:..::..||..|    |...||    :..|.|.|  :|.....||..:       
  Rat   280 ----RHQQQQEQQNSQRLGQGEPQGHGEQRHSLSSEVLSSRMEGMMASYTPLAPPQQQIVAMEQS 340

  Fly   400 ---SPPPVGQGHTFGSYPDNIVYTNIDQAVGSSLHASKAHHRLHSSNNVSDLSNDSSPDQGYPDF 461
               |..|..||.|....|.|                ....|.:.|..:::.||            
  Rat   341 PYGSSDPFQQGLTPPQMPGN----------------DSIFHDIDSDTSLTSLS------------ 377

  Fly   462 PPSPDSWLG--DSGSTNTTSAN 481
                |.:||  |.||......|
  Rat   378 ----DCFLGSSDVGSLQARVGN 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 22/50 (44%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 28/54 (52%)
Homeodomain 257..313 CDD:459649 31/55 (56%)
Lmx1bXP_063139064.1 None

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