Protein Alignment Lim3 and Lmx1b

DIOPT Version :9

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: NP_446161.1
• Gene: Lmx1b / 114501
• RGDID: 620843
• Length: 402
• Species: Rattus norvegicus
• Alignment Length: 412
• Identity: 124/412 - (30%)
• Similarity: 169/412 - (41%)
• Gaps: 132/412 - (32%)

  Fly   122 CGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSACDM 186
            |.||...|.|||:::|.|.:||.:||||:.|...|...|:.|:.:|:||:|:.:.:..|||.|..
  Rat    56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCME 120

  Fly   187 GIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEE------------- 238
            .|.||:.|.||.:.||||.||.|.:|.|.|..||||.|.|. :|:||.|||:
  Rat   121 KIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKDLLSSVSPDES 184

  Fly   239 --------------AKAKGLYLDGS-LDGDQPN--KRPRTTITAKQLETLKTAYNNSPKPARHVR 286
                          ||.:|....|| .||..|.  |||||.:|.:|....|.::..|.||.|.||
  Rat   185 DSVKSEDEDGDMKPAKGQGSQNKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVR 249

  Fly   287 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDY 351
            |.|:.:|||.:|||||||||:|||.|:|.:
  Rat   250 ETLAAETGLSVRVVQVWFQNQRAKMKKLAR----------------------------------- 279

  Fly   352 DSFSHHDLSNDSYSTVNLGLDEGASPHSIRGSYMHG---SSSP-----------SQYPPSSRSP- 401
                .|....:..::..||       ..:..|.|.|   |.:|           .|.|..|..|
  Rat   280 ----RHQQQQEQQNSQRLG-------QEVLSSRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPF 333

  Fly   402 -----PPVGQGHTFGSYPDNIVYTNIDQAVGSSLHASKAHHRLHSSNNVSDLSNDSSPDQGYPDF 461
                 ||...|.....|.::.::.:||                 |..:::.||
  Rat   334 QQGLTPPQMPGDHMNPYGNDSIFHDID-----------------SDTSLTSLS------------ 369

  Fly   462 PPSPDSWLG--DSGSTNTTSAN 481
                |.:||  |.||......|
  Rat   370 ----DCFLGSSDVGSLQARVGN 387

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	22/50 (44%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	28/54 (52%)
		Homeobox	259..312	CDD:278475	29/52 (56%)
Lmx1b	NP_446161.1	LIM1_Lmx1b	56..108	CDD:188757	23/51 (45%)
		LIM2_Lmx1a_Lmx1b	115..169	CDD:188764	28/54 (52%)
		Homeobox	222..276	CDD:395001	29/53 (55%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910