Protein Alignment Lim3 and lhx4

DIOPT Version :9

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: XP_002937009.3
• Gene: lhx4 / 100497384
• XenbaseID: XB-GENE-492744
• Length: 376
• Species: Xenopus tropicalis
• Alignment Length: 368
• Identity: 189/368 - (51%)
• Similarity: 231/368 - (62%)
• Gaps: 39/368 - (10%)

  Fly   119 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSA 183
            ||:|.||:|.|||:||||||:|.||:.||:|.||...|.::||.|.|.::|||||||.:||||:|
 Frog    27 IPRCSGCNEHILDKFILKVLDRHWHSACLKCCECQVPLAERCFYRAGNVYCKEDFFKCFGTKCTA 91

  Fly   184 CDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDG 248
            |..|||||||||:|||.||||.||.|.:|||.|.||||||||||.:|:||.|||.||...
 Frog    92 CQQGIPPTQVVRKAQDFVYHLHCFSCIICSRQLATGDEFYLMEDGRLVCKEDYETAKLND----- 151

  Fly   249 SLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 313
              |.:...||||||||||||||||.||.||||||||||||||.:|||||||||||||||||||||
 Frog   152 --DSEGGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKR 214

  Fly   314 LKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHD--------LSNDSYST---- 366
            |||||||.||.|:::|::.:...::.|....::..|.....|:.|        .|...||:
 Frog   215 LKKDAGRQRWGQFYKSVRKSRLGKSGKESSTEDCGVSDSELSYRDEQILSELGSSGGIYSSGGDL 279

  Fly   367 ---VNLGLDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSYPDNIVYTNIDQAVGS 428
               ||.|.....:..|.:.  :| .|||.:.|.|..|         ..|.|.:.:..|:|.|.|.
 Frog   280 VPLVNGGFTMDGTGQSYQD--LH-DSSPYEMPQSPSS---------ISSLPSHGLPYNMDNAAGL 332

  Fly   429 SLHASKAHHRLHSSNNVSDLSNDSSPDQGYPDFPPSPDSWLGD 471
            ..|...   |:..:...||:|.:||  .||||||.||.|||.:
 Frog   333 LNHPPL---RVLPAAPTSDISTESS--MGYPDFPTSPGSWLDE 370

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	29/50 (58%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	39/54 (72%)
		Homeobox	259..312	CDD:278475	48/52 (92%)
lhx4	XP_002937009.3	LIM1_Lhx4	30..81	CDD:188852	29/50 (58%)
		LIM2_Lhx3_Lhx4	89..144	CDD:188762	39/54 (72%)
		Homeobox	160..214	CDD:395001	49/53 (92%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	113	1.000	Domainoid score	I6080
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	344	1.000	Inparanoid score	I2275
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1174754at2759
OrthoFinder	1	1.000	-	-		FOG0002911
OrthoInspector	1	1.000	-	-		otm49443
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X1144
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	6.060