DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Phlpp and lrfn4

DIOPT Version :9

Sequence 1:NP_001260558.1 Gene:Phlpp / 35178 FlyBaseID:FBgn0032749 Length:954 Species:Drosophila melanogaster
Sequence 2:XP_004913580.1 Gene:lrfn4 / 101734445 XenbaseID:XB-GENE-6465078 Length:722 Species:Xenopus tropicalis


Alignment Length:627 Identity:125/627 - (19%)
Similarity:198/627 - (31%) Gaps:186/627 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 VLDLSSLAQLE---TLKCSRNKLMELIINGTNLQTLVADHNYLHNISTTNTHPVPLKLQRIDISH 143
            ||.:.||.::.   ...|:...|.|      :|.||.|:...|:.....:...|.|:|.      
 Frog     8 VLLVGSLVKVTHTCPFHCTCQNLSE------SLSTLCANKGLLYVPPYIDRRTVELRLA------ 60

  Fly   144 NNF------SELPNWVGACASLTAINASHNRLNNVAVLLRNYRITELVSLDLAYNDLKQLDQFPE 202
            :||      .:..|..|    |..:..|.|.::|:    :.|...:|.||...:.|..:|....|
 Frog    61 DNFIRVVEQEDFLNMTG----LVDLTLSRNTIDNI----KPYAFGDLESLRSLHLDGNRLTLIHE 117

  Fly   203 ----GFSSIRSLQLQSNELPSLPDNFFAVTHARLETLNVSCNKLSTLPRYEQNNHAALVNLSLAG 263
                |..:::.|.:.:|:|.::|...|...|..||.|::|.|.|.::|                 
 Frog   118 EALRGMLNLQHLIINNNQLVTIPVATFDDFHLTLEDLDLSYNNLVSVP----------------- 165

  Fly   264 NHLNDSIFEPLHNAAKLRVLHLAYNRIGVLPAACVRNWPELEILVLSGNMLQQLPEEVATLGQLR 328
                   :|.:.|...|..|:|.:|.|..:.........:|..|.::.|.|..||.:        
 Frog   166 -------WEAIQNMVSLHTLNLDHNLIESVMEGTFSELYKLSRLDMTSNRLHTLPPD-------- 215

  Fly   329 VLRCCNNLLLCTPQLAKLAMLKVLDLSHNHLDRVNLLALVPSRNLKYLDLSGN----------LQ 383
                        |...:              .:..:::..|..:...|:..||          |:
 Frog   216 ------------PLFVR--------------SQTGVISPTPYTSTIVLNFGGNPFHCNCELLWLR 254

  Fly   384 LQVDEQQFKVCQSQSQ---RH-WSLVDVSGNNRAALPTTKIRQVSAQRNQNKTSGPWTMGFAE-- 442
            ..|.|...:.|.|.||   |: ||:.:........|.|....|:.....|..|.....:|..|  
 Frog   255 RLVREDDMETCASPSQLAGRYFWSIPEEEFTCEPPLITRHTHQLWVLEGQRATLKCRAIGDPEPV 319

  Fly   443 ----TPGSGDCRKLSVYQLRAANYGGSDEALYGMFEALEGRGRAAQEMSHLVPDLMKQEQMVKDS 503
                :|..    |:.....|.|:|..      |..:.|.                         :
 Frog   320 IHWVSPDD----KIMPNSSRTASYRN------GTLDILV-------------------------T 349

  Fly   504 AVRDYMKFTLLAAQQQCGSVRSAALFHLTRTRAPSKVRPLKSKR----YVLRMASTGGLDAYLIR 564
            .:||...:|.:|......|.....|          |:.||..:.    .|||. ..|..|.....
 Frog   350 TIRDDGSYTCIAINAAGESTAQVDL----------KMIPLPHRNNGSISVLRQ-DPGSSDITTSS 403

  Fly   565 R-----TSQLRLTKPDVIQKDQIHSMPDPHVLELILSNDDEYLV-VGNAQLWSVMDIDRAAREIR 623
            :     |.:.||.:..||..|...|    ..|.....|...|:| :...|....:| :.....|.
 Frog   404 KASANVTEEKRLPENAVIVSDVTSS----SALVRWFMNRSAYIVWMYQIQYNCTVD-ETLVYRIL 463

  Fly   624 KEENSLLAAKRLV--------------DIAQSFAAAESLSVI 651
            .......|.|.||              |:|.|.||..||..:
 Frog   464 PSTTKHFALKHLVPGVDYDLCILAISDDVATSLAATRSLGCV 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PhlppNP_001260558.1 leucine-rich repeat 91..110 CDD:275380 3/21 (14%)
LRR_8 109..169 CDD:290566 15/65 (23%)
leucine-rich repeat 111..135 CDD:275380 6/23 (26%)
leucine-rich repeat 136..158 CDD:275380 5/27 (19%)
leucine-rich repeat 159..183 CDD:275380 5/23 (22%)
leucine-rich repeat 184..209 CDD:275380 7/28 (25%)
LRR_8 205..266 CDD:290566 13/60 (22%)
leucine-rich repeat 210..230 CDD:275380 5/19 (26%)
leucine-rich repeat 232..255 CDD:275380 7/22 (32%)
LRR_RI <256..410 CDD:238064 28/167 (17%)
leucine-rich repeat 256..276 CDD:275380 1/19 (5%)
LRR_8 279..359 CDD:290566 12/79 (15%)
leucine-rich repeat 280..303 CDD:275380 5/22 (23%)
leucine-rich repeat 304..348 CDD:275380 7/43 (16%)
leucine-rich repeat 349..372 CDD:275380 1/22 (5%)
PP2Cc 461..655 CDD:294085 42/215 (20%)
lrfn4XP_004913580.1 leucine-rich repeat 54..77 CDD:275380 6/28 (21%)
LRR <56..>215 CDD:227223 44/196 (22%)
leucine-rich repeat 78..101 CDD:275380 6/26 (23%)
leucine-rich repeat 102..125 CDD:275380 5/22 (23%)
leucine-rich repeat 126..148 CDD:275380 5/21 (24%)
leucine-rich repeat 151..174 CDD:275380 9/46 (20%)
leucine-rich repeat 175..198 CDD:275380 5/22 (23%)
leucine-rich repeat 199..217 CDD:275380 6/37 (16%)
LRRCT 242..286 CDD:214507 11/43 (26%)
Ig_2 303..376 CDD:143241 17/117 (15%)
fn3 416..491 CDD:365830 15/79 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X32
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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