DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10492 and gls-1

DIOPT Version :9

Sequence 1:NP_001097179.1 Gene:CG10492 / 35177 FlyBaseID:FBgn0032748 Length:810 Species:Drosophila melanogaster
Sequence 2:NP_871882.2 Gene:gls-1 / 172682 WormBaseID:WBGene00007975 Length:1052 Species:Caenorhabditis elegans


Alignment Length:567 Identity:109/567 - (19%)
Similarity:178/567 - (31%) Gaps:221/567 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   317 LSQQSSPSSSRTTSPQRDRSLINVPLQAQQQPHQQQQ------MRGMSQRMADQKNTRRPSAETT 375
            |:.|.....||.|.       |.:...|.::.|||::      |.|        .|....:|.||
 Worm    26 LTLQEKRKKSRLTG-------ILMKSMANKKNHQQKKSTDGSTMNG--------NNATATAAATT 75

  Fly   376 PPPTSIG--GEQQHDSVNEGGSSNSSGTSLHRLIRNGFPRLGHNHRVKANTFIPQHQQQQQQHHF 438
            ...:.||  ....|...|:..|||::.||...:          .......|.:|..||.|.|:.:
 Worm    76 QNSSQIGQNSNSSHSVTNDNTSSNNASTSTSSI----------TSTTTTTTTVPSSQQSQSQNQY 130

  Fly   439 QNPNYNMNVMMQSMNINDDGSGSMMNSMNS-----------TKSAATTGSESGSSNGSCGDLSPS 492
            .:           ..::...|.|....::.           .|::.|..|:||:..|:.....|.
 Worm   131 SH-----------QRLSSTSSTSQQTGISKFPAKKAGHNELEKTSNTANSQSGAFKGTTNKDRPK 184

  Fly   493 ETPTPTQLSLPLHNSVDAGMGMITTVLPTGLGNYQPKPHHFSYKQQQQQMNLQQRLN-GRNGMDK 556
            |....|      |:                 ||.|.:.:|..:.......|.|.|.| .|:..::
 Worm   185 EKEKNT------HS-----------------GNRQSQVNHNHHHSNHVSGNQQNRKNKNRDHSNQ 226

  Fly   557 TYQQVYTTGTPSI--VSDAQT---ISSASLQQQQPQTLLISQSPVS-TPTTTVLLQPQQ-----P 610
            :|:..||....:.  :.:|::   :|::|| ....|....|..||| |||...:.|..:     |
 Worm   227 SYRGGYTHNHNNYHSLENAKSSGFLSNSSL-SSAGQISASSAPPVSTTPTAIPIFQESKIVQTDP 290

  Fly   611 P------------------PTTYNTSYP------------------------------------- 620
            |                  |..|.::.|                                     
 Worm   291 PVEEAKKKKEKPKIKRDEEPMPYKSTDPKNMDSVMAFKEHDEWDKVEFMCELVSFLSPTDLRLLG 355

  Fly   621 ---------YHQR-----------------------GPPPPQQ----------TIFQAHSAPPPQ 643
                     |:.:                       .||||||          .::|..:|....
 Worm   356 NCIEGSVRCYNNQMRPVEKTSNCSDPTAGLPQFVCSPPPPPQQVYYFPGIADAALYQTRNAVNSV 420

  Fly   644 TVRGGFRYPMG-PPHNG---ELIYP---TFHTSLAFLPMTAGGTPTAVTPAQLQSTAAVVST--N 699
            .|:   ::|.| ||..|   .::||   .||.|.:   .|...:..:|....:.:...|:|:  |
 Worm   421 FVQ---QHPPGLPPLLGGMQNIMYPPDANFHHSTS---CTTPSSSVSVANKDVNNVPVVLSSSVN 479

  Fly   700 AVSVQTVPTPQQQQVPSTTPYSALTVCPITGAGGGG-------TAPK 739
            .:| ..:|:.:||          |...|.|..|..|       |:|:
 Worm   480 GIS-NNIPSDRQQ----------LDSKPNTARGSSGNINQSNTTSPE 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10492NP_001097179.1 PAT1 <164..>268 CDD:286811
PHA03247 <591..702 CDD:223021 38/222 (17%)
gls-1NP_871882.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162256
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.