DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn3 and EMB2719

DIOPT Version :9

Sequence 1:NP_001260557.1 Gene:Rpn3 / 35176 FlyBaseID:FBgn0261396 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_173447.1 Gene:EMB2719 / 838609 AraportID:AT1G20200 Length:488 Species:Arabidopsis thaliana


Alignment Length:494 Identity:223/494 - (45%)
Similarity:313/494 - (63%) Gaps:19/494 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DVEMEVDPT-AETLADEKKNQDVAAVQEIREQIRQIEKGVASKESRFILRVLRNLPNTRRKLNGV 74
            ||||:.:.| ::::.    :...:.:|.::|....|:.|..:||.|.|.|.:|.....|:||.|.
plant     4 DVEMKDNNTPSQSII----SSSTSTMQNLKEIAALIDTGSYTKEVRRIARAVRLTIGLRQKLTGS 64

  Fly    75 VFRNLAQSIYPAGADREAAVALMPAVEKDATELPDVPKKQVATKA------PIAEVDAYFYLLLL 133
            |..:........|:  ||...|...|.|......:|.....||:|      | ||::.|.|.::|
plant    65 VLSSFLDFALVPGS--EAHSRLSSFVPKGDEHDMEVDTASSATQAAPSKHLP-AELEIYCYFIVL 126

  Fly   134 VKLIDASDLKRAGISADALMAKISIQNRRTLDLIGAKSYFYFSRVAELKNSLEGIRSFLHARLRT 198
            :.|||......|...:.|.:|::...||||:|:|.::.|||:|...|....|..||..|.|...:
plant   127 LFLIDQKKYNEAKACSSASIARLKNVNRRTIDVIASRLYFYYSLSYEQTGDLAEIRGTLLALHHS 191

  Fly   199 ATLRNDFEGQAVLINCLLRNYLHYALYDQADKLVKKSVYPESASNNEWARFLYYLGRIKAAKLEY 263
            ||||:|..||..|:|.||||||||.|||||:||..|:...|:.||.::.|:|:|||:|:..:|||
plant   192 ATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEY 256

  Fly   264 SDAHKHLVQALRKSPQHAAIGFRQTVQKLIIVVELLLGNIPERVVFRQAGLRQSLGAYFQLTQAV 328
            :||.:.|:||.||:| .||:|||....|..|:|.||||.||||.:|.|.|:.::|..||:||.||
plant   257 TDAKESLLQAARKAP-IAALGFRIQCNKWAILVRLLLGEIPERSIFTQKGMEKALRPYFELTNAV 320

  Fly   329 RLGNLKRFGDVVSQYGPKFQLDHTFTLIIRLRHNVIKTAIRSIGLSYSRISPQDIAKRLMLDS-- 391
            |:|:|:.|..|..::...|..|.|..||:|||||||:|.:|:|.:||||||..|:||:|.|:|  
plant   321 RIGDLELFRTVQEKFLDTFAQDRTHNLIVRLRHNVIRTGLRNISISYSRISLPDVAKKLRLNSEN 385

  Fly   392 -AEDAEFIVSKAIRDGVIEATLDPAQNFMRSKESTDIYSTREPQLAFHERISFCLNLHNQSVKAM 455
             ..|||.||:||||||.|:||:|.....|.|||:.|||||.|||.||:.||:||||:||::|:|:
plant   386 PVADAESIVAKAIRDGAIDATIDHKNGCMVSKETGDIYSTNEPQTAFNSRIAFCLNMHNEAVRAL 450

  Fly   456 RYPPKSYGKDLESAEERREREQQDLELAKEMAEDDEDGF 494
            |:||.:: |:.||.|:||||:||:.||||.|||:|:|.|
plant   451 RFPPNTH-KEKESDEKRRERKQQEEELAKHMAEEDDDDF 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn3NP_001260557.1 PCI 320..413 CDD:279707 52/95 (55%)
Rpn3_C 426..484 CDD:285563 35/57 (61%)
EMB2719NP_173447.1 PCI 311..418 CDD:396121 55/106 (52%)
Rpn3_C 421..478 CDD:400604 35/57 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 195 1.000 Domainoid score I910
eggNOG 1 0.900 - - E1_KOG2581
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2102
Inparanoid 1 1.050 386 1.000 Inparanoid score I514
OMA 1 1.010 - - QHG54652
OrthoDB 1 1.010 - - D836599at2759
OrthoFinder 1 1.000 - - FOG0004490
OrthoInspector 1 1.000 - - otm3169
orthoMCL 1 0.900 - - OOG6_101680
Panther 1 1.100 - - LDO PTHR10758
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3183
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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