DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Acn and Acin1

DIOPT Version :9

Sequence 1:NP_001260556.1 Gene:Acn / 35173 FlyBaseID:FBgn0263198 Length:739 Species:Drosophila melanogaster
Sequence 2:NP_001163939.1 Gene:Acin1 / 305884 RGDID:1311945 Length:1339 Species:Rattus norvegicus


Alignment Length:824 Identity:249/824 - (30%)
Similarity:378/824 - (45%) Gaps:203/824 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PVAVARRSRRSRKVSENEKTEVETPVVAQNNEAECPKVPPASQEINEAR--ASSEERAGSGASPV 79
            |.|.:..||.|...|.:.::...:|..:.:.....|:  ...:|:::||  |:..:||..|:...
  Rat   573 PSADSSSSRSSSPSSSSSRSRSRSPDSSASRSQSSPR--SKQREVSQARVHANPHDRAKMGSRST 635

  Fly    80 RRSRGSRTTPRKRTESKGGDKKVD---------TIPE-EEPENGKDVEKDAVE-----EEKTVAP 129
            ..|| ||:..|.|:.|.|..|.:.         |..| ::|..|::....:|.     |.|..||
  Rat   636 SESR-SRSRSRSRSASSGSRKSLSPGVSRDGNTTYTETKDPSCGQEAAAPSVPQLQVLEPKEKAP 699

  Fly   130 PAA------NESESEDRAKTEDQQAQDDE----SC----AEPAVVKDDDVEKEDLK--PQQE-VP 177
            ..:      :.|:.|...|...|:.|.::    .|    |||.........:..|.  |:.| .|
  Rat   700 TCSASVRGRHMSQPEPEQKHVIQRLQPEQESPKKCEAEEAEPPAATQPQTSEPQLSQLPEAERTP 764

  Fly   178 TSTDD------DTKQSEPEQEVKVPSPSSKDEEHLKTTSDVLDIQTEEVDERDEEASAPAERRET 236
            .:.::      ||.::.||.||..|.....|:     .|:         |:|.|.:         
  Rat   765 HTAEEKEDVTMDTSENRPENEVPEPPVPIADQ-----VSN---------DDRPEGS--------- 806

  Fly   237 KKRHKEQIKEQQPAEEEEHKENHKQIDENPEQIHDEPADLSNDKHDPCLNSSATNTTGAPVLQQQ 301
                         |||||.||:     ..|:....:.:.:|..|.....||   :|.|.      
  Rat   807 -------------AEEEERKES-----SMPKSFKRKISVVSATKGVQAGNS---DTEGG------ 844

  Fly   302 RSVRKRKWLTNKKSSDRTPPVLAISTDSLKNIIADVVQPVPLS------DVQLESS--SEEEGLV 358
            :..|||:|..:..::.:.|.: :|:|:|||::|.|:   .||:      |:..:.|  ||:|   
  Rat   845 QPGRKRRWGASTAATQKKPSI-SITTESLKSLIPDI---KPLAGQEAVVDLHADDSRISEDE--- 902

  Fly   359 TSDRDSE-----------RSASPAPPSEASKDRDNKGNTANTCDTTAEASADNEGAGAAPPAAA- 411
             ::|:.:           |:.:...|:|..::...:          .|...:.|....|||.|: 
  Rat   903 -TERNGDDGTHDKGLKICRTVTQVVPAEGQENGQRE----------EEEEKEPEAEPPAPPQASV 956

  Fly   412 ------------------DTVSAQ-VSLSKATVSTAAPHIVRD---PSPARNRASHVLYITNLVR 454
                              ||::.: :|..|:.||......||.   |||.|.:.|::::|:||||
  Rat   957 EAALPPPVEHEVKKVTLGDTLTRRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIVHISNLVR 1021

  Fly   455 PFTVLQLKGLLARTGKIVEEDGFWIDRIKSKCYVAYSTEDEAIETRHALHGVRWPVSNPKCLNVD 519
            |||:.|||.||.|||.:||| .||||:|||.|:|.|||.:||:.||.|||||:||.||||.|..|
  Rat  1022 PFTLGQLKELLGRTGTLVEE-AFWIDKIKSHCFVTYSTVEEAVATRTALHGVKWPQSNPKFLCAD 1085

  Fly   520 FGSRTDMD--RAIL-------STKDE-APRYGQENTRDNQQSGNAWSRLEPSDKKPARPVREWDV 574
            :..:.::|  |.:|       .|::: |||                    |....|..||:....
  Rat  1086 YAEQDELDYHRGLLVDRPSEAKTEEQGAPR--------------------PLHPPPPPPVQPPPH 1130

  Fly   575 GKKEPSDHDKHSNDRRRDSKDRLDSRSRDAERAGQERKRSRD--REG---RGRDRERERLDRNAH 634
            .:.||.:.::...::..:.:..::.|    ||...||:..||  |||   |.|.|:|.|.:|   
  Rat  1131 PRAEPREQERAVREQWAEREREMERR----ERTRSEREWDRDKVREGPRSRSRSRDRRRKER--- 1188

  Fly   635 ARSRSGSPASKTKKENEPPIRLLDDLFRKTKGTPCIYWLPLTPEAIAEKEAFRQKRIEEHKLRIK 699
            |:|:......|.|.:.|||.:||||||||||..|||||||||...|.:|||.:.:|.:|.:.|.|
  Rat  1189 AKSKEKKSEKKEKAQEEPPAKLLDDLFRKTKAAPCIYWLPLTESQIVQKEAEQAERAKEREKRRK 1253

  Fly   700 ERE-----ERQKEREKDRDRQ--RETRRNRSNERRRSRSRERER 736
            |||     ||:||.|::|:||  ||.||..|.||.|.|.|||:|
  Rat  1254 EREEEEQKEREKEAERERNRQLEREKRREHSRERERDRERERDR 1297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AcnNP_001260556.1 RRM_ACINU 444..530 CDD:240878 51/87 (59%)
RSB_motif 600..691 CDD:292910 46/95 (48%)
Acin1NP_001163939.1 SAP 72..106 CDD:128789
RRM_ACINU 1011..1097 CDD:240878 50/86 (58%)
RSB_motif 1165..1240 CDD:292910 40/77 (52%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354219
Domainoid 1 1.000 85 1.000 Domainoid score I8016
eggNOG 1 0.900 - - E1_KOG2416
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 274 1.000 Inparanoid score I2899
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005012
OrthoInspector 1 1.000 - - oto97816
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR46589
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3543
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.940

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