DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and LMO4

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_006760.1 Gene:LMO4 / 8543 HGNCID:6644 Length:165 Species:Homo sapiens


Alignment Length:120 Identity:51/120 - (42%)
Similarity:75/120 - (62%) Gaps:5/120 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECR-QFLDESCTCFVRDGKTYCKRDYVRLFGTK-- 115
            |.||||:|.|:::| .|.|..||:.||||..|: |..|...:|:.:.|...|:.||:||||..  
Human    23 CAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGA 86

  Fly   116 CDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKED 170
            |..||.|...::.||||:..::|::||.||.|..:|:|||.|...: |:|:|:.|
Human    87 CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYIN-GSLFCEHD 140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 22/54 (41%)
LIM2_Isl 116..171 CDD:188760 23/55 (42%)
HOX 241..297 CDD:197696
LMO4NP_006760.1 LIM1_LMO4 23..77 CDD:188772 22/54 (41%)
LIM2_LMO4 87..141 CDD:188773 23/55 (42%)
Blue background indicates that the domain is not in the aligned region.

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