DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and PHV

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_174337.1 Gene:PHV / 839928 AraportID:AT1G30490 Length:841 Species:Arabidopsis thaliana


Alignment Length:197 Identity:49/197 - (24%)
Similarity:78/197 - (39%) Gaps:50/197 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 SHKSI--RDKRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVE----MTSLSP 282
            :|.|:  ||....|...||..|    ...:|:..|...|...|:|.:|.::||:.    :.::.|
plant     3 AHHSMDDRDSPDKGFDSGKYVR----YTPEQVEALERVYAECPKPSSLRRQQLIRECPILCNIEP 63

  Fly   283 RVIRVWFQNKRCKDKKKTIQMKLQMQQEKEGRKLGYGAMQGIPMIASSPVRHDSPLNLQGLDVQT 347
            |.|:|||||:||::|::....:||    ...|||  .||..:.|..:..::              
plant    64 RQIKVWFQNRRCREKQRKESARLQ----TVNRKL--SAMNKLLMEENDRLQ-------------- 108

  Fly   348 YQPPWKALSDFALHADLDSNGAI--NTHTPAFQQLVNQMHGYDLNGMPILPPHPHSHPAQGPPHQ 410
                 |.:|:...     .||.:  ..||.:.....|......::|        .....|.|.||
plant   109 -----KQVSNLVY-----ENGFMKHRIHTASGTTTDNSCESVVVSG--------QQRQQQNPTHQ 155

  Fly   411 HP 412
            ||
plant   156 HP 157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752
LIM2_Isl 116..171 CDD:188760
HOX 241..297 CDD:197696 19/59 (32%)
PHVNP_174337.1 Homeodomain 21..79 CDD:459649 20/61 (33%)
bZIP <73..112 CDD:269834 12/63 (19%)
START_ArGLABRA2_like 164..380 CDD:176884
MEKHLA 693..840 CDD:462555
Blue background indicates that the domain is not in the aligned region.

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