DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and Isl1

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_059035.3 Gene:Isl1 / 64444 RGDID:61957 Length:349 Species:Rattus norvegicus


Alignment Length:367 Identity:211/367 - (57%)
Similarity:252/367 - (68%) Gaps:47/367 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 KKQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVRL 111
            ||:.:|.|||||.||||||||||:||||||||||||.||.|:||||||||||||||||||||:||
  Rat    10 KKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIRL 74

  Fly   112 FGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 176
            :|.||.||...||||||||||::|::|||||||.||:|||:||||||||:.| |:|:.||||:|:
  Rat    75 YGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDG-LFCRADHDVVER 138

  Fly   177 SSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIR---DKRPSGPSD 238
            :|..:                  ...||..:.:..|...::  ..|....::|   .|:|.    
  Rat   139 ASLGA------------------GDPLSPLHPARPLQMAAE--PISARQPALRPHVHKQPE---- 179

  Fly   239 GKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKRCKDKKKTIQM 303
             |.|||||||||||||||||||.|||||||||||||||||.|||||||||||||||||||::|.|
  Rat   180 -KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIMM 243

  Fly   304 KLQMQQEKEGRKLGYGAMQGIPMIASSPVRHDSPLNLQGLDVQTYQPPWKALSDFALHADLDSNG 368
            | |:||::...|.....|.|.||:|:||.|||..|....::||:||||||.||||||.:|:|.  
  Rat   244 K-QLQQQQPNDKTNIQGMTGTPMVAASPERHDGGLQANPVEVQSYQPPWKVLSDFALQSDIDQ-- 305

  Fly   369 AINTHTPAFQQLVNQMH---GYDLNGMPI------LPPHPHS 401
                  ||||||||...   |.:..|..:      ||..|:|
  Rat   306 ------PAFQQLVNFSEGGPGSNSTGSEVASMSSQLPDTPNS 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 48/53 (91%)
LIM2_Isl 116..171 CDD:188760 37/54 (69%)
HOX 241..297 CDD:197696 52/55 (95%)
Isl1NP_059035.3 LIM1_Isl 17..71 CDD:188752 48/53 (91%)
LIM2_Isl 79..133 CDD:188760 37/54 (69%)
HOX 181..237 CDD:197696 52/55 (95%)
LIM-binding domain (LID). /evidence=ECO:0000250 262..291 15/28 (54%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 312..349 8/30 (27%)

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