DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and LMO3

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:XP_047285112.1 Gene:LMO3 / 55885 HGNCID:6643 Length:178 Species:Homo sapiens


Alignment Length:152 Identity:41/152 - (26%)
Similarity:62/152 - (40%) Gaps:43/152 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVR-------- 110
            |.||..:|.|:|:|: |.|..||..|||| .|       |.|.:.:....|...|:.        
Human    24 CAGCNRKIKDRYLLK-ALDKYWHEDCLKC-AC-------CDCRLGEHLKRCGSIYIHAAHTEIGI 79

  Fly   111 -----------------------LFGT--KCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQ 150
                                   |||.  .|..|.......:.|||||..::|::||.|..|.::
Human    80 CVTLEWPLPFVIIDFSQQITIAWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 144

  Fly   151 LLPGDEFALRDAGALYCKEDHD 172
            ...||:|.|:: ..:.|:.|::
Human   145 FCVGDKFFLKN-NMILCQTDYE 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 19/53 (36%)
LIM2_Isl 116..171 CDD:188760 17/54 (31%)
HOX 241..297 CDD:197696
LMO3XP_047285112.1 LIM 24..>60 CDD:413332 18/44 (41%)
LIM2_LMO1_LMO3 110..164 CDD:188775 17/54 (31%)
Blue background indicates that the domain is not in the aligned region.

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