DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and lmo3

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_001315524.1 Gene:lmo3 / 553774 ZFINID:ZDB-GENE-050522-201 Length:167 Species:Danio rerio


Alignment Length:122 Identity:45/122 - (36%)
Similarity:67/122 - (54%) Gaps:5/122 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGT--K 115
            |.||..:|.|:|:|: |.|..||..||||..|...|.| ..|.:.:.....|:|||:||||.  .
Zfish    35 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGN 98

  Fly   116 CDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 172
            |..|.......:.|||||..::|::||.|..|.::...||:|.|:: ..:.|:.|::
Zfish    99 CAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKN-NMILCQTDYE 154

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 21/54 (39%)
LIM2_Isl 116..171 CDD:188760 17/54 (31%)
HOX 241..297 CDD:197696
lmo3NP_001315524.1 LIM1_LMO1_LMO3 35..89 CDD:188774 21/54 (39%)
LIM2_LMO1_LMO3 99..153 CDD:188775 17/54 (31%)
Blue background indicates that the domain is not in the aligned region.

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