DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tup and Lmo3

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:XP_006237647.1 Gene:Lmo3 / 497798 RGDID:1561357 Length:156 Species:Rattus norvegicus


Alignment Length:122 Identity:45/122 - (36%)
Similarity:67/122 - (54%) Gaps:5/122 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGT--K 115
            |.||..:|.|:|:|: |.|..||..||||..|...|.| ..|.:.:.....|:|||:||||.  .
  Rat    24 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGN 87

  Fly   116 CDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 172
            |..|.......:.|||||..::|::||.|..|.::...||:|.|:: ..:.|:.|::
  Rat    88 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKN-NMILCQTDYE 143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 21/54 (39%)
LIM2_Isl 116..171 CDD:188760 17/54 (31%)
HOX 241..297 CDD:197696
Lmo3XP_006237647.1 LIM1_LMO1_LMO3 24..78 CDD:188774 21/54 (39%)
LIM2_LMO1_LMO3 88..142 CDD:188775 17/54 (31%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.