DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and lmo2

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_001011238.1 Gene:lmo2 / 496679 XenbaseID:XB-GENE-479144 Length:158 Species:Xenopus tropicalis


Alignment Length:123 Identity:46/123 - (37%)
Similarity:67/123 - (54%) Gaps:11/123 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFG---- 113
            |.||...|.|:|.|: |.|..||..||.|..|...|.| ....:.:.|:..|:|||:||||    
 Frog    30 CGGCQQSIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGL 93

  Fly   114 -TKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKED 170
             ..|||...:|   :..||.|.|::|:|||:|:||.:....||.:.|.::. :.|::|
 Frog    94 CASCDKRIRAF---EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSD-IVCEQD 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 20/54 (37%)
LIM2_Isl 116..171 CDD:188760 20/55 (36%)
HOX 241..297 CDD:197696
lmo2NP_001011238.1 LIM1_LMO2 30..85 CDD:188770 21/55 (38%)
LIM2_LMO2 94..149 CDD:188771 20/58 (34%)
Blue background indicates that the domain is not in the aligned region.

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