DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and ro

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster


Alignment Length:117 Identity:32/117 - (27%)
Similarity:52/117 - (44%) Gaps:6/117 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 HSSELGSMSDSGSESGSHKSIRDKRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKE 272
            |:...|..||....:|....:..:|   ..:|:..|.||..:.:|...|...::.|.......:.
  Fly   161 HAFPAGFPSDPHFSAGFSAFLARRR---RKEGRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRRF 222

  Fly   273 QLVEMTSLSPRVIRVWFQNKRCKDKKKTIQMKLQMQQEKEGRKLGYGAMQGI 324
            :|.|...|:...|::||||:|.|||:  |: |.|:.|......:..|.|..|
  Fly   223 ELAETLRLTETQIKIWFQNRRAKDKR--IE-KAQIDQHYRNFVVANGFMSSI 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752
LIM2_Isl 116..171 CDD:188760
HOX 241..297 CDD:197696 16/55 (29%)
roNP_524521.1 Homeodomain 196..248 CDD:459649 15/51 (29%)
Blue background indicates that the domain is not in the aligned region.

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