DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and bap

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_732637.1 Gene:bap / 42537 FlyBaseID:FBgn0004862 Length:382 Species:Drosophila melanogaster


Alignment Length:392 Identity:81/392 - (20%)
Similarity:138/392 - (35%) Gaps:117/392 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 FSKNDFVMRAKTKIFHIECFRCSACARQLLPGD--EFALRDAGALYCKEDHDVLEKSSQSSLTSS 185
            ||.||.:.|:..:...:..........:|.|..  |.::..:..|.|: |..:.:.:....:..|
  Fly    24 FSINDILTRSNPETRRMSSVDSEPEPEKLKPSSDRERSISKSPPLCCR-DLGLYKLTQPKEIQPS 87

  Fly   186 SVESNNNI---SSSNNNNTNLSNNNHSSELGSMSDSGSE---------------------SGSHK 226
            :.:.:|.:   :::.:|     ||:|....|:.:.|.::                     ..|:.
  Fly    88 ARQPSNYLQYYAAAMDN-----NNHHHQATGTSNSSAADYMQRKLAYFGSTLAAPLDMRRCTSND 147

  Fly   227 SIRDKRP---SGPS------DG----KPTRVRTVLNEKQLHTL-----RTCYNANPRPDALMKEQ 273
            |..|..|   |.||      ||    :..|.|...:..|:..|     :..|.:.|.     :.:
  Fly   148 SDCDSPPPLSSSPSESPLSHDGSGLSRKKRSRAAFSHAQVFELERRFAQQRYLSGPE-----RSE 207

  Fly   274 LVEMTSLSPRVIRVWFQNKRCKDKKKTIQMKLQMQQEKEGRKLGYGAMQGIPMIASSPVRHDSPL 338
            :.:...|:...:::||||:|.|.|:|.|       |:.|...|  ||.:.:|:  ...||.|.. 
  Fly   208 MAKSLRLTETQVKIWFQNRRYKTKRKQI-------QQHEAALL--GASKRVPV--QVLVREDGS- 260

  Fly   339 NLQGLDVQTYQPPWKALSDFALHADLDSNGAINTHTPAFQQLVNQMHGYDLNGMPILP----PHP 399
                   .||             |.:.:.||.:...||...:..........|:| ||    |.|
  Fly   261 -------TTY-------------AHMAAPGAGHGLDPALINIYRHQLQLAYGGLP-LPQMQMPFP 304

  Fly   400 HSHPAQGPPHQHPPP---------------------PGGPHNHQNQQPNQQPGGS--SLDSGITS 441
            :.:|....|...|||                     ||.....:...|:  |.|.  |::||..|
  Fly   305 YFYPQHKVPQPIPPPTQSSSFVTASSASSSPVPIPIPGAVRPQRTPCPS--PNGQMMSVESGAES 367

  Fly   442 HH 443
            .|
  Fly   368 VH 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752
LIM2_Isl 116..171 CDD:188760 10/49 (20%)
HOX 241..297 CDD:197696 13/60 (22%)
bapNP_732637.1 Homeodomain 176..232 CDD:459649 13/60 (22%)
Blue background indicates that the domain is not in the aligned region.

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