DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and zgc:56628

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_956566.1 Gene:zgc:56628 / 393242 ZFINID:ZDB-GENE-040426-1099 Length:172 Species:Danio rerio


Alignment Length:130 Identity:58/130 - (44%)
Similarity:76/130 - (58%) Gaps:5/130 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECR-QFLDESCTCFVRDGKTYCKRDYVRLFGTK-- 115
            |||||.:|.|:::| .|.|..||..||||..|: |..:...:||.:.|...||.||:||||..  
Zfish    34 CVGCGCKISDRFLL-FALDGYWHCHCLKCSCCQAQLAEIGSSCFTKRGLILCKSDYLRLFGHSGA 97

  Fly   116 CDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEKSSQS 180
            |..||.|...|:.||||:..:||::||.||.|..||:|||.|...: |.|||:.|.....:.|.|
Zfish    98 CRACGTSIPANEMVMRAQGNVFHVKCFVCSICHNQLVPGDRFHYAN-GKLYCERDKSAASEHSDS 161

  Fly   181  180
            Zfish   162  161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 23/54 (43%)
LIM2_Isl 116..171 CDD:188760 26/54 (48%)
HOX 241..297 CDD:197696
zgc:56628NP_956566.1 LIM 34..88 CDD:413332 23/54 (43%)
LIM2_LMO4 98..152 CDD:188773 26/54 (48%)
Blue background indicates that the domain is not in the aligned region.

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