DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and lhx8a

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_001003980.1 Gene:lhx8a / 378959 ZFINID:ZDB-GENE-031008-2 Length:332 Species:Danio rerio


Alignment Length:348 Identity:97/348 - (27%)
Similarity:142/348 - (40%) Gaps:75/348 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDK 118
            |..||.:|.|:|:|:| .|:.||..||.|..|:..|....:|::::.:.:||.||.|.:||:|..
Zfish    51 CTSCGTEIVDKYLLKV-NDMCWHVRCLSCSVCQTSLGRHISCYIKEKEIFCKLDYFRKYGTRCAH 114

  Fly   119 CGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEKSSQSSLT 183
            ||.:...||:|.|||...:|:.||.|.:|.|||..|:||||.|...| |:..:|.:         
Zfish   115 CGRNIHSNDWVRRAKGNTYHLACFACFSCKRQLSTGEEFALVDERVL-CRVHYDCM--------- 169

  Fly   184 SSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRDKRPSGPSDGKPTRVRTVL 248
                               |.|...:.|.|...:......|.:.:...:|:       .|.||..
Zfish   170 -------------------LDNLKRAMENGKGVNVEGAVPSEQEVNQPKPA-------KRARTSF 208

  Fly   249 NEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKRCKDKKKTIQMKLQMQQEKEG 313
            ...||..::..:..:..|||...::|.|.|.||.|||:|||||.|.:.||..             
Zfish   209 TADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHV------------- 260

  Fly   314 RKLGYGAMQGIPMIASSPVRHDSPLNLQGLDVQTYQPPWKALSDFALHADLDSNGAINTHTPAFQ 378
                            || .|.|...:..|......||......:...|.:|        ||...
Zfish   261 ----------------SP-NHSSAAPVSSLQSAHLSPPLIDELQYTAFAPVD--------TPMLT 300

  Fly   379 QLVNQMHGYDLNGMPILPPHPHS 401
            .|.:.|..:....:.:.|..|||
Zfish   301 ALHSYMDVHSPTSLVLQPLLPHS 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 19/53 (36%)
LIM2_Isl 116..171 CDD:188760 25/54 (46%)
HOX 241..297 CDD:197696 22/55 (40%)
lhx8aNP_001003980.1 LIM1_Lhx7_Lhx8 50..105 CDD:188767 20/54 (37%)
LIM2_Lhx7_Lhx8 112..166 CDD:188769 25/54 (46%)
Homeodomain 202..258 CDD:459649 22/55 (40%)

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