DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and lms

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_611491.2 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster


Alignment Length:384 Identity:83/384 - (21%)
Similarity:124/384 - (32%) Gaps:86/384 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 VLEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRDKRPSGPS 237
            :|.|....|.||.. :|..:.|....|....|..:..:....:.|:..:..|...:.....:|..
  Fly    19 ILAKPEMRSSTSFE-DSVQDESGRGGNCLGASRASSPATSSCLDDNMDDGKSDIDLASDDGNGLG 82

  Fly   238 DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKRCKDKKKTIQ 302
            |.:..|.||..:..|:..|.|.:..........:..|.:...|:...|::||||:|.|.|:|   
  Fly    83 DDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRK--- 144

  Fly   303 MKLQMQQEKEGRKLGYGAMQGI-----PMIASSPVRHDSPLNLQGLDVQTYQPPWKALSDFALHA 362
                ...:.|.....|.|..||     ||:....:         .|..||...|....|..    
  Fly   145 ----YTSDVETLASHYYAQLGIGGLARPMVVGDRL---------WLFSQTPTGPTPIQSIM---- 192

  Fly   363 DLDSNGAINTHTPAFQQLVNQMHGYDLN-GMPILP------PHPHSHPAQGPPHQH-------PP 413
             |:.:|:......|.....:.|..|..: |||.||      ...::..|:|.|...       .|
  Fly   193 -LNGSGSAAPMASATTATGSPMRPYATSGGMPPLPGPSVMESARNAILARGQPLNFALPFGVAKP 256

  Fly   414 PPGGPHNHQNQQPNQQPGGSSLDSGITSHHHPDSTDSYVTYL------ESDDKSKLALTPSSSSS 472
            |.||           .|..|.:     ....|.:| |||.|.      ||..:.|.|..|..:.|
  Fly   257 PAGG-----------VPAASYI-----PRCKPYAT-SYVDYAASLPTNESYLQMKYATLPPEAES 304

  Fly   473 ASAGTSISSPPSGVGAGGGGAVGGGSGVLGLGVVANQSATEQLMQMLQKVTGSASPASH 531
                                  |..:|:..|..|...:....|.|....|.|:|:...|
  Fly   305 ----------------------GASNGLAELERVFGDANANFLQQRSTPVAGTATAYGH 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752
LIM2_Isl 116..171 CDD:188760
HOX 241..297 CDD:197696 15/55 (27%)
lmsNP_611491.2 Cnd2 33..>106 CDD:450400 14/72 (19%)
Homeodomain 87..143 CDD:459649 15/55 (27%)
Blue background indicates that the domain is not in the aligned region.

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