DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and inv

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_523699.3 Gene:inv / 36239 FlyBaseID:FBgn0001269 Length:576 Species:Drosophila melanogaster


Alignment Length:175 Identity:43/175 - (24%)
Similarity:71/175 - (40%) Gaps:51/175 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 SSQSSLTSSSVESNNNISSSNNNNTNLSNNN---------HSSELGSMSDSGSESG--------- 223
            ||.:::.|:|.:||:..:||:..||:.:..:         .:...|:...||.:||         
  Fly   356 SSLANICSNSNDSNSTATSSSTTNTSGAPVDLVKSPPPAAGAGATGASGKSGEDSGTPIVWPAWV 420

  Fly   224 ----------SHKSIRDKRPSGP-------------------SDG----KPTRVRTVLNEKQLHT 255
                      |.:|.|.::|..|                   :||    :..|.||..:..||..
  Fly   421 YCTRYSDRPSSGRSPRARKPKKPATSSSAAGGGGGGVEKGEAADGGGVPEDKRPRTAFSGTQLAR 485

  Fly   256 LRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKRCKDKKKT 300
            |:..:|.|.......::||.....|:...|::||||||.|.||.:
  Fly   486 LKHEFNENRYLTEKRRQQLSGELGLNEAQIKIWFQNKRAKLKKSS 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752
LIM2_Isl 116..171 CDD:188760
HOX 241..297 CDD:197696 19/55 (35%)
invNP_523699.3 Homeodomain 472..528 CDD:459649 19/55 (35%)
Engrail_1_C_sig 529..554 CDD:431338 0/2 (0%)
Blue background indicates that the domain is not in the aligned region.

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