DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tup and Lmo2

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_001032435.2 Gene:Lmo2 / 362176 RGDID:1307101 Length:220 Species:Rattus norvegicus


Alignment Length:120 Identity:44/120 - (36%)
Similarity:64/120 - (53%) Gaps:5/120 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK-- 115
            |.||...|.|:|.|: |.|..||..||.|..|...|.| ....:.:.|:..|:|||:||||..  
  Rat    92 CGGCQQNIGDRYFLK-AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGL 155

  Fly   116 CDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKED 170
            |..|.......:..||.|.|::|:|||:|:||.:....||.:.|.::. :.|::|
  Rat   156 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSD-IVCEQD 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 20/54 (37%)
LIM2_Isl 116..171 CDD:188760 18/55 (33%)
HOX 241..297 CDD:197696
Lmo2NP_001032435.2 LIM1_LMO2 92..147 CDD:188770 21/55 (38%)
LIM2_LMO2 156..211 CDD:188771 18/55 (33%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.