DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and CG5708

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster


Alignment Length:194 Identity:62/194 - (31%)
Similarity:90/194 - (46%) Gaps:30/194 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 NHNHNQTGLQP-SLVMNHHLDLDCHGHDVIKKQRLSH-------CVGCGGQIHDQYILRVAPDLE 74
            |.||.:..::. |.:.:..|.......:....|:|.|       |.|||.:|.|:|:| .|.|..
  Fly    34 NSNHTKDTVETNSNISSSQLSFMDESSNDFNNQQLIHSNSLIKVCGGCGDKISDRYLL-YALDRY 97

  Fly    75 WHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK--CDKCGNSFSKNDFVMRAKTKI 136
            ||..||||..|...|.| ..:||.|.|...||:||..:||..  |..||.:...::.|.:|.|.|
  Fly    98 WHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVCSGCGETIPPSELVAKALTGI 162

  Fly   137 ----------------FHIECFRCSACARQLLPGDEFALRDAGALYCKED-HDVLEKSSQSSLT 183
                            ||:.||.|:.|...|.|||.:.:..| :|.|::| |.:|:..:.|:.|
  Fly   163 NNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGA-SLVCEQDWHKLLKGPANSNGT 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 25/54 (46%)
LIM2_Isl 116..171 CDD:188760 21/71 (30%)
HOX 241..297 CDD:197696
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 25/54 (46%)
LIM 142..212 CDD:413332 20/70 (29%)
Blue background indicates that the domain is not in the aligned region.

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