DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and lhx3

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:XP_073805886.1 Gene:lhx3 / 30455 ZFINID:ZDB-GENE-980526-131 Length:411 Species:Danio rerio


Alignment Length:472 Identity:128/472 - (27%)
Similarity:185/472 - (39%) Gaps:142/472 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 QRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYV---- 109
            |.:..|.||...|.|::||:|. |..||:.||||.:|:..|.:.  ||.|....|||.|:.    
Zfish    23 QDIPVCAGCNQHIVDRFILKVL-DRHWHSKCLKCSDCQSQLADK--CFSRGDSVYCKDDFFKSPL 84

  Fly   110 ---------RLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGAL 165
                     |.|||||..|.........|.||:..::|:.||.|..|.|||..|||:.|.:...|
Zfish    85 TRVCLCFVSRRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRL 149

  Fly   166 YCKEDHDVLEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRD 230
            .||.|::..::....|..                                               
Zfish   150 VCKADYETAKQREADSTA----------------------------------------------- 167

  Fly   231 KRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKRCK 295
            |||           ||.:..|||.||:..||.:|:|...::|||...|.|..||::|||||:|.|
Zfish   168 KRP-----------RTTITAKQLETLKNAYNNSPKPARHVREQLSTETGLDMRVVQVWFQNRRAK 221

  Fly   296 DKKKTIQMKLQMQQEKEGR-----KLGYGAMQGIPMIASSPVRHDSPLNLQGLDVQ-----TYQP 350
            :|:    :|....:::.|:     |...|         ||....||... .|:|..     |.:|
Zfish   222 EKR----LKKDAGRQRWGQYFRNMKRSRG---------SSKSDKDSTQE-DGMDSDAEVSFTDEP 272

  Fly   351 PWKALSDFALHADLDSNG---AINTHTPAFQQLVNQMHGYDLNGMPILP---PH-------PHSH 402
            |   :||..     .|||   :::..:||..:.......:.|....|:|   |:       |:|.
Zfish   273 P---MSDLG-----HSNGIYSSLSESSPALSRQGGNHPAFPLEHGAIIPSQEPYHDIQASSPYSL 329

  Fly   403 P-AQGP----PHQHP-------PPPGGPHNHQNQQPNQQPG----------GSSLDSGITSHHHP 445
            | :.||    |...|       |..|.|...|:...|..||          .|.|.:| :|..:|
Zfish   330 PQSPGPLQPLPRHQPLISSLVYPESGLPMVGQSGGQNMTPGVRMMAAGNGPSSDLSTG-SSGGYP 393

  Fly   446 DSTDSYVTYLESDDKSK 462
            |...|..::|:..|.::
Zfish   394 DFPASPASWLDEVDHAQ 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 23/53 (43%)
LIM2_Isl 116..171 CDD:188760 20/54 (37%)
HOX 241..297 CDD:197696 25/55 (45%)
lhx3XP_073805886.1 None

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