DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and Lhx3

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:XP_038962056.2 Gene:Lhx3 / 170671 RGDID:71078 Length:431 Species:Rattus norvegicus


Alignment Length:482 Identity:127/482 - (26%)
Similarity:179/482 - (37%) Gaps:150/482 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 KQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVRLF 112
            ::.:..|.||...|.|::||: |.|..||:.||||.:|...|.|  .||.|....|||.|:.:.|
  Rat    30 RREIPMCAGCDQHILDRFILK-ALDRHWHSKCLKCSDCHVPLAE--RCFSRGESVYCKDDFFKRF 91

  Fly   113 GTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEKS 177
            ||||..|.........|.||:..::|:.||.|..|.|||..||||.|.:...|.||.|::. .|.
  Rat    92 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET-AKQ 155

  Fly   178 SQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRDKRPSGPSDGKPT 242
            .::..|:                                              |||         
  Rat   156 REAEATA----------------------------------------------KRP--------- 165

  Fly   243 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVI---------------------- 285
              ||.:..|||.||::.||.:|:|...::|||...|.|..||:                      
  Rat   166 --RTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVSARSRPPAPEGARAPREAGQ 228

  Fly   286 -------RVWFQNKRCKDKKKTIQMKLQMQQEKEGR-----KLGYGAMQGIPMIASSPVRHDSPL 338
                   :|||||:|.|:|:    :|....:::.|:     |...|         ||....||..
  Rat   229 PLTIPTPQVWFQNRRAKEKR----LKKDAGRQRWGQYFRNMKRSRG---------SSKSDKDSIQ 280

  Fly   339 NLQGLDVQTYQPPWKALSDFALHADL-DSNG---AINTHTPAFQQLVNQMHGYDLNGMPILPPHP 399
            ..|..|.:.      :.:|....||: .:||   ::....||..:.|..:..:.|....:..|..
  Rat   281 EGQDSDAEV------SFTDEPSMADMGTANGLYSSLGEPAPALGRPVGGLGSFTLEHGGLAGPEQ 339

  Fly   400 HSHPAQGPPHQHPPPPGGPHNHQNQQPNQQPGGSSLDSGITSHHHPDSTDSYVTYLESDDKSKLA 464
            ......|.|:..||.|..|.:    .|..||..|||       .:||              :.|.
  Rat   340 FRELRPGSPYGIPPSPAAPQS----LPGPQPLLSSL-------VYPD--------------TNLG 379

  Fly   465 LTPSSSSSASAGTSISSPPSGVGAGGG 491
            |.||       |.....||..|.||.|
  Rat   380 LVPS-------GPPGGPPPMRVLAGNG 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 24/53 (45%)
LIM2_Isl 116..171 CDD:188760 21/54 (39%)
HOX 241..297 CDD:197696 25/84 (30%)
Lhx3XP_038962056.2 None

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